Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgagtctgatctgcagaatttcctctgctaggcagaaagactggcttggtatctggggtga...

Basic information

species Glycine max
transcript GLYMA16G26140.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 4
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagt---tagaccttttgtttgacaaaattgatttttaattgagtctgatctgcagaatttcctctgctaggcagaaagactggcttggtatctggggtga----------------------------------------------------------------------------------------
||| ||| |||| |||||||| |||||||| || || ||||||||||||||||| || |||||||| || || || ||||||||||| ||||||||   |||||||   | ||  | |||   |    ||   ||  ||| |||    |    || ||| |||  | |  |  || |       | ||   || ||   ||                                                                                          
GCTGTACCGGCCACCTCGATGCTCTCACTGTTCTATATGTAATAACTGTGTGGAGCGTTTTGATCATCACTGCCCTTGGGTTGGGCAATGCATTGGAAGGgtaagtatcttgatgtgttggaaggtttaagatatcctta-ttgcaattagcttgaaga-tttgatatcatgtgcggtgttgtggtctgtatacctcttgttggattttctatattagatattagtagattgttagttactactttaaagttttaacaagtcagcgctaattatcaacttatctgctgcag

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgagtctgatctgcagaatttcctctgctaggcagaaagactggcttggta-tctggggtga-------------------------------------------------
||| ||| |||| |||||||| || ||||| || || || || ||||||||||||||||||||||| || ||||| |||||||| || ||||| || || ||||||   |  |||| |    ||    || |   ||       |  |        || | |     |     ||   | |      ||  | |    |||                                                 
GCTTTACCGGCCACCTCGATGCTCACACTGTTCGATATGCAACAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAATGCATAGGACTTgtaagtatcatgtttt-tccagcagttctg-tacctatccttaccgtaggaaagacatgtgcgtatttgtttggagttattcttccagtgcttttcattgagctctcttcaaatcaacttgagcctaatcataaagcatatttggtgcag

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagtta-----gaccttt---tgtttgacaaaattgat--ttttaattgagtctgatctgcagaatttcctctgctaggcaga---------aagactggcttggtatctggggtga-----------------------------
| | ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || |||||||||||     ||    |   ||||| | |    |  |  | ||| |||| | |||| |  |||  | |   | || || | |         ||   || ||   | |||    ||                              
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaat-tgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G821611_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattgagtctgatctgcagaatttcctctgctaggcagaaagact-ggcttggtatctggggtga------------------------------------------------------------------------------------
||| ||| | || |||||||| || ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| || |||||||| || |||||||||||  |    || |      |  ||  ||||||| | |||        ||||    | | | |  ||| | | ||| |  ||| | | ||| |  |                                                                                    
GCTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttactcgagatgct------agctg--ttttaatagcgtccttatattagaacaatcgcgg-tgtgcacatacacttgaattgatgtttggaggtactctttctgggtagattttcatttttttaagttgttgactaactttctattctgttaagcctgatcatcaacatatttgtgcag

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G179002_T03 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattg-atttttaattgagtctgatctgcagaatttcctctgctaggcagaaagactggcttggtatc-tggggtga
||| ||||| || |||||||| || ||||| || || ||||||||||||||||| || ||||||||||| || || ||||||||||||||||| ||  ||||||||| ||   |   ||  | |   | | ||| ||  |  | | ||   | |||  |||  |||  ||  ||| |    |  |     ||      | | 
GCTGTACAGACCACCTCGATGCTCACACTGTTCTATCTGTAATAACTGTGTGGAGCGCTTTGATCACCACTGCCCTTGGGTTGGGCAGTGCATAGGATTGgtaagtttgagaataacttgaatagtttagcattgttgttgcaatatgcattacag--tttaatcttgtatccagtagtgttatcagaagattgctcagcgg

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G868588_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattg-atttttaattgagtctgatctgcagaatttcctctgctaggcagaaagactggcttggtatctggggtga-
||| ||||| || |||||||| || |||||||| || ||||||||||||||||| || ||||| ||||| || || |||||||| || ||||| ||  ||||||||| |    |   ||  | |   |   | | ||  |  | | ||   | ||||  ||   ||  ||  ||| |    |  |     | |     | | 
GCTGTACAGACCACCTCGATGCTCACACTGCTCTATCTGTAATAACTGTGTGGAGCGCTTTGACCACCACTGCCCTTGGGTTGGCCAATGCATAGGATTGgtaagtttgggaataccttgaatagtttcacagtgttgttgcaatatgcattacaga--ttaaacttgtatccagtagtgttaacagaagagcactcatcag

upper sequence: GLYMA16G26140.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTACAGGCCTCCTCGATGTTCTCACTGCTCAATTTGTAATAACTGTGTGGAACGGTTTGATCACCATTGTCCCTGGGTTGGGCAGTGCATTGGGCTGgtaagttagaccttttgtttgacaaaattgatttttaattg---agtctg-atctgcagaatttcctctgctaggcagaaagactggcttggtatctggggtga--
||| || || |||||||| || || ||||| || || ||||||||||| || ||||| ||||||||||| || || |||||||||||||| ||||| ||||||||  | |  || | || |||   ||    | ||   ||   || ||  |||   |||| |  |  |       | |||      |    |   |||||||   
GCTTTATAGACCTCCTCGCTGCTCACACTGTTCCATATGTAATAACTGCGTCGAACGATTTGATCACCACTGCCCTTGGGTTGGGCAGTGTATTGGACTGgtaagagataaattattttagaccttatgacatattggatgtatagcctatatccaaagaagtaacatt------tacaaaactcaacaccattcatggggtgggt