1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttag
species | Glycine max |
transcript | GLYMA16G26130.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|31455979|gb|CD398007.1|CD398007
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCCAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTEST: gi|12774333|gb|BG239260.1|BG239260
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|22522379|gb|BU081190.1|BU081190
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|15204800|gb|BI427568.1|BI427568
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|31462609|gb|CD404637.1|CD404637
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|151398535|gb|EV268406.1|EV268406
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|20075906|gb|BQ094689.1|BQ094689
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209721878|gb|BW666447.1|BW666447
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTEST: gi|17518500|gb|BM187542.1|BM187542
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209726101|gb|BW675275.1|BW675275
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209717228|gb|BW657697.1|BW657697
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|5508958|gb|AI855516.1|AI855516
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTANAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTNTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|213607305|gb|DB957141.1|DB957141
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTEST: gi|209714722|gb|BW674260.1|BW674260
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|31311067|gb|CD396270.1|CD396270
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|31456842|gb|CD398870.1|CD398870
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209704712|gb|BW656677.1|BW656677
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|31464248|gb|CD406276.1|CD406276
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|11412397|gb|BF424408.1|BF424408
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|7691300|gb|AW759493.1|AW759493
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209729376|gb|BW663665.1|BW663665
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTEST: gi|13251847|gb|BG362750.1|BG362750
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|51343067|gb|CO983800.1|CO983800
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|209711204|gb|BW683819.1|BW683819
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTEST: gi|31308019|gb|CD393222.1|CD393222
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|15204740|gb|BI427508.1|BI427508
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|17402022|gb|BM178804.1|BM178804
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|9821068|gb|BE556578.1|BE556578
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|17519514|gb|BM188556.1|BM188556
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|22525368|gb|BU084179.1|BU084179
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTEST: gi|213603108|gb|DB960413.1|DB960413
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGEST: gi|209724483|gb|BW658200.1|BW658200
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTG
EST: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA