1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGgtcctcttctatgctaaaatactgttaattgaatgccttgttggatgatagattattatccaactctttacaaattcatttcag
species | Glycine max |
transcript | GLYMA16G26070.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAAGTTATGCAG GTCACTATGTTCCTCATTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAAEST: gi|14258992|gb|BG881900.1|BG881900
genomic: GGAGAAAGTTATGCAGgtcctcttct ... ttcatttcagGTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAA
EST: TCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG GTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAAEST: gi|192308091|gb|FK000419.1|FK000419
genomic: TCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGgtcctcttct ... ttcatttcagGTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAA
EST: TCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG GTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAAEST: gi|11413292|gb|BF425303.1|BF425303
genomic: TCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGgtcctcttct ... ttcatttcagGTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAA
EST: TNCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAG GTCACTATGTT
genomic: TCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGgtcctcttct ... ttcatttcagGTCACTATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGgtcctcttctatgctaaaatactgttaattgaatgccttgttggatgatagattattatccaactctttacaaattcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA