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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGGAACTTGTCACGTTGCAGAGTTGTGCTAATCCTCCCAAGAATTTGAAACCCGGGAACTATTGGTATGATAAGGTCTCTGGGTTTTGGGGGAAGgtatgtttaattttttttttattctttaatccgcgtgttagtagtattgttagttattgatgtggaagattcgaatccctaatctctcctctcccacttccctccaccactagtatttttgggaggtaatggttttttttttgtcttggatttttgagttttatctcattgtttgtttgtttgtgtggattttgcag

Basic information

species Glycine max
transcript GLYMA16G25990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
TTTTGAGGAACTTGTCACGTTGCAGAGTTGTGCTAATCCTCCCAAGAATTTGAAACCCGGGAACTATTGGTATGATAAGGTCTCTGGGTTTTGGGGGAAGgt-----atgtttaattttttttttattctttaatccgcgtgttagtagtattgttagttattgatgtggaagattcgaatccctaatctctcctctcccacttccctccaccactagtatttttgggaggtaatggttttttttttgtcttggatttttgagttttatctcattgtttgtttgtttgtgtggattttgcag
   ||| || || || ||  | |||| |||| |||||||||| |||||  ||||||| ||| |||||||||||||||| || |||||  ||||||| |||||     || |||| | || |||| | | ||   ||   || |   | || || |||  |||  || |   |  || |  | |   |                                                                                                                   
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgaggaatatttactgttcttttgagttttgtgtcttagtttctattgt-ttcttatatatatatatatgatgttggggttctacag------------------------------------------------------------------------------------------------------------------