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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttctttttgccccttttttaaaatatgcatttaaactttctttctttggtggcttccttttcagccatgacggcatcttatgcctttctcgtt...

Basic information

species Glycine max
transcript GLYMA16G25200.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25200.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G36530.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttctttttgccccttttttaaaatatgcatttaaactttctttc--tttggtggcttccttttcagccatgacggcatcttatgcctttctcgtt-
 ||||  |||||| ||||| || || |||||||| || |||||||||||||| ||  | |||||||||||||||||||| || ||||  || || |||||||   ||   | |   | || |  |  |   ||   | ||  ||||   ||   ||  |  |||    | |      ||    || |       || |  |  
TTTGGGAATGGAGAGGTCACAAGATTCATTATGTTGTTCAAGGAGAAGGCTCGCCTCTAGTTCTTATTCATGGTTTTGGTGCTTCTGTCTTTCATTGGAGgtaccttcaatctcacctccatgctctattgatcagtgtaggctttaagtcaactttttaccttatcatacgaattcgagctaatatcggtagatttttatag

upper sequence: GLYMA16G25200.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g02010.t01 (Vitis vinifera), 5'ss of exon 3
ATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttctttttgcc-ccttttttaaaatatgcatt-taaactttctttctttggtggcttcctt--ttcagccatgacggcatcttatgcctttctcgtt
 |||||||||| | ||||| ||||||||||||||||  ||||||||||| | ||| ||||||||||||||||| ||||| || || ||||| || ||||||||  |  | || |  ||  |||   |   ||  || |  | || |       ||   |||  |  ||  ||||  | | || |  | | |||   |       
TTTGGACATGGCGAGGTCACAAAATACATTATGTAGAACAAGGAGAAGGATTTCCGATTGTTCTTATTCATGGATTTGGTGCTTCCGCATTTCATTGGAGgttgatcattttatacccatcttccctgtcatgagcttcatgaattagtagagttcattggagtagttcattcaatctttacagtgtataatgttatagg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604690|gb|DB960469.1|DB960469
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|209728317|gb|BW658529.1|BW658529
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|209725699|gb|BW663190.1|BW663190
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|192301616|gb|FG998468.1|FG998468
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|18692833|gb|BM521681.1|BM521681
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|151399533|gb|EV269404.1|EV269404
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|213591367|gb|DB955715.1|DB955715
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|20448288|gb|BQ252412.1|BQ252412
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|13125828|gb|BG316398.1|BG316398
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|151405996|gb|EV275811.1|EV275811
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|120529684|gb|EH257818.1|EH257818
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|20814627|gb|BQ299105.1|BQ299105
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|151405769|gb|EV275583.1|EV275583
EST:     GCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: GCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: gi|209716247|gb|BW657550.1|BW657550
EST:     TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG                         GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT