1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttctttttgccccttttttaaaatatgcatttaaactttctttctttggtggcttccttttcagccatgacggcatcttatgcctttctcgtt...
species | Glycine max |
transcript | GLYMA16G25200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|209728317|gb|BW658529.1|BW658529
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|209725699|gb|BW663190.1|BW663190
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|192301616|gb|FG998468.1|FG998468
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|18692833|gb|BM521681.1|BM521681
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|151399533|gb|EV269404.1|EV269404
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|213591367|gb|DB955715.1|DB955715
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|20448288|gb|BQ252412.1|BQ252412
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|13125828|gb|BG316398.1|BG316398
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|151405996|gb|EV275811.1|EV275811
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|120529684|gb|EH257818.1|EH257818
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|20814627|gb|BQ299105.1|BQ299105
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|151405769|gb|EV275583.1|EV275583
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: GCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTTEST: gi|209716247|gb|BW657550.1|BW657550
genomic: GCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
EST: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAG GTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
genomic: TCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttc ... atatctccagGTACAACATTCCAGAATTGGCTAAGAAACACAAGGTATATGCCTTAGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGACATGGAGGGGTCATAAAATACATTATGTAGTGCAAGGAGAAGGCTCTCCCATTGTTCTTATTCATGGTTTTGGGGCCTCTGCATTCCACTGGAGgtttgttttctttttgccccttttttaaaatatgcatttaaactttctttctttggtggcttccttttcagccatgacggcatcttatgcctttctcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg