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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCTAGCTCCTTCACGCATTCCAAATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatcctaaccagtattgtcctttacttgaag

Basic information

species Glycine max
transcript GLYMA16G25150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 3
---------------AACTCTAGCTCCTTCACGCATTCCAAATATCCATATTCCTCAGTTTATGGTGgtatgtgatatgtgaaacccctgcagtacttttgtataaaaattcaatcaacattttactgcttccacttgatataatc--ctaaccagtattgtcct--ttacttgaag---------------------------------
               | | |  | || |  |    ||| | ||||||||||||||| ||||||||||||||||||| || ||| ||| |    || |||| | |    |||  | || | |||   |   |||| ||  | | | |  || ||   | ||    |  ||  |||| |                                 
GATCTGCAGTCTCAAAGCACAGGGTCTTCTAGTGGTTCAAGATATCCATATTCCTCGGTTTATGGTGgtatgtgat-tgggaagcccat-tgatagttttctgtgg--attttaacatcttttctttctatccattttcttttaacatctgactttttttaatgtaattttttgatgattgcttctaaacaatgtcttttccatatgaag