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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGGGGTAGTTCAGTATTGTTCTTACCTTGTTCTCTGTACAATTGGACTCTACCTGAGGGTGCTTGTCTATTTCATGGCATGCCATTGGATGTTAAGgtataatgtaaaacaatatttctgtctgatactcatctggtgttttaagttagaattttggaaactttataaatatatttcgcctttatcttcaacctaatattttaaacttgtagcaacattatttttttgatcctcagctaaatgcttgaag

Basic information

species Glycine max
transcript GLYMA16G24280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24280.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G45320.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTGGGGGTAGTTCAGTATTGTTCTTACCTTGTTCTCTGTACAATTGGACTCTACCTGAGGGTGCTTGTCTATTTCATGGCATGCCATTGGATGTTAAGgtataatgtaaaacaatatttctgtctgatactcatctggtgttttaagttagaattttggaaactttataaatatatttcgcctttatcttcaacctaatattttaaacttgtagcaacattatttttttgatcctcagctaaatgcttgaag
 || |  ||   |||||| || ||  |||| ||| |||| ||||| ||||| |  ||||| |||||| |||  ||||||||||||||||| ||||| ||||||   | |||| |  ||   |  |   |  ||||     |  |   |||   | |  | |    |||  |                                                                                   
AATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTGAAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGgtac--tctaaatccctaaaaccata-aaccctcaaagcatcatcagagtctcattactcgtttttttgcag----------------------------------------------------------------------------------