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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATGAAACATGTTTCTCTACGGGGTTCTGTAACAGCAACTGAGCTCACATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataattctccctcaactccttcaagtgacaaggagcaaacaacattcaattactggcatcagaaacttttgacgttttgctgtgaattgtgatta...

Basic information

species Glycine max
transcript GLYMA16G23830.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7327152|gb|AW621014.1|AW621014
EST:     CCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: CCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|192316526|gb|FK006789.1|FK006789
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|192323275|gb|FK015281.1|FK015281
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTNNNNNNNNCAGTTGTGGATCTGCTA
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGG-CAGTTGTGGATCTGCTA
EST: gi|192325558|gb|FK019414.1|FK019414
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|151398193|gb|EV268071.1|EV268071
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATGGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|192299385|gb|FG988727.1|FG988727
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCCGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|192316527|gb|FK006790.1|FK006790
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
EST: gi|192326302|gb|FK015864.1|FK015864
EST:     ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTG                         TGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG
genomic: ATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataat ... ttgttttcagTGATAGGATCTGATGTAGTGTACAGTGAGGGGGCAGTTGTGGATCTGCTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACATGAAACATGTTTCTCTACGGGGTTCTGTAACAGCAACTGAGCTCACATGGGGAGAAGATCCTGACCCAGAACTCATTGACCCCAAACCCGATTTTGgtatgataattctccctcaactccttcaagtgacaaggagcaaacaacattcaattactggcatcagaaacttttgacgttttgctgtgaattgtgatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc