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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc...

Basic information

species Glycine max
transcript GLYMA16G20260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g68750.1 (Oryza sativa), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgagga-tctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaat-tgttgtatgtttgttcc
||||||||||||||||||||||||||| ||||| ||| | || || |||| |||| || | |||||| |||| || |||||||| ||||| |||||||||||||||| | |       || |   ||   | ||| |  ||||     || |  |       | | | ||     | ||||    ||||| ||| |      
TAATCTTAAGTACATGGGCATTGATGCTCTTGGCCGGTTAATTAAAATAAATCCAGATATCGCAGAAGAGCACCAGCTGGCTGTTATTGATTGCTTAGAGgtgaggaatatagcaaaattcagctcttgcgtgttca--tggaaaatattgggtttttagtatgttgcttccatgcgtatattcctgttgcatgctgcaaga

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G031352_T02 (Zea mays), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc-
||||||||||||||||||||||||||| |||||  || | ||||| |||| |||| || |||||||| |||| || |||||||||||||| ||||||||||||||| |       | |  |    |||| |  || ||   |    | ||   |    || |   |   |   |    |  ||   ||||    |||| | 
TAATCTTAAGTACATGGGCATTGATGCTCTTGGCAGGTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTGATTGCTTAGAGgtgagggttgtgccatttgaagcattgaaaatgtatgacaaacatttattctgtgatatgttcctgccatccatagcgttcatccgtgta-acatgttgct

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G146697_T03 (Zea mays), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatgg--atggcttttgcatagcctggtttcgattttggtcttataaattg-ttgtatgtttgttcc
|||||||||||||||||| |||||||| ||||| ||||| ||||| ||||  ||| || |||||||| |||| || || ||||||||||| ||| |||||||||||         | |  |    | || | ||| ||     || | || ||  || | || |    | |        |||| |      | |  ||||   
TAATCTTAAGTACATGGGTATTGATGCTCTTGGCCGGCTAATAAAAATAAACCCAGATATTGCAGAAGAGCACCAGCTAGCTGTCATTGATTGCCTAGAGgtgagggatgtgccatgtgaagcattaaaaatttatgacaaacattgattctgtgtaacatgttactcactgcaaaaaaataagtcaaccattttattgt---

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G031352_T01 (Zea mays), 5'ss of exon 3
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc-
                                    | | ||||| |||| |||| || |||||||| |||| || |||||||||||||| ||||||||||||||| |       | |  |    |||| |  || ||   |    | ||   |    || |   |   |   |    |  ||   ||||    |||| | 
------------------------------------GTTAATAAAAATAAATCCAGATATTGCAGAAGAGCACCAGCTGGCTGTCATTGATTGCTTAGAGgtgagggttgtgccatttgaagcattgaaaatgtatgacaaacatttattctgtgatatgttcctgccatccatagcgttcatccgtgta-acatgttgct

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G031352_T01 (Zea mays), 5'ss of exon 2
TAATCTTA-AGTACATGG--GCAT-TGATGCGCTTGGTCGGCTGATAAAGA---TAAGT--CCACATGTTGCAG----AACAGCATCAA-----CTGGCTGT-----CATTGACTGCTTAGAGgtgaggatctctt---tgtcttgaatgctgaagagtta--agatggatggcttttgcatagcctg----gtttcgattttggtcttataaattgttgtatgtttgttcc------
 |||  || | |  |||   |||| || |||  ||  ||   |     | |   ||||   | |   | |||||    |||| ||||||     |||   ||     |||   ||   |   ||  |  ||   |    |||  ||     || ||  | |  |  |  ||     |||||| |  ||    ||     |  |  |||||   |     | ||   || ||       
CAATGCTATACTGTATGAATGCATATGCTGCATTTCATCCATTTTCCCAAACCCTAAGATGCTAGTGGCTGCAGCTGAAACAACATCAAAGTTTCTGAAGgtttgcacatgatctttattatgggaaaaataaatggcatgttgtgttctttggaggctaaccaacttaatcatccttgcattgattgcagagtgatagtcataatcttaagtacatgggcattgatgctcttggcag

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgag---gatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc
|||||| ||||| |||||||||||||| ||| || | |||||||||||||||||| |  |||| ||||| || ||| ||||||||||||| ||||||||||| ||   || |  ||| |  | | |  || ||   | |  ||| |    ||    |    |     |    |     ||  |   ||  |||||   |    
TAATCTAAAGTATATGGGCATTGATGCCCTTAGTAGACTGATAAAGATAAGTCCAGAAATTGCTGAACAACACCAATTGGCTGTCATTGATTGCTTAGAGgtaagaaagaccatttttttgttacttttggagttgtgaactggttcatgttccttttttttacccacttagtctacttttcaccctggagtatgcaagc---

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ29441 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc
|||  | ||||| ||||| |||||||| || |||||||| || || || |  ||| |   ||| ||| | |||||||||||||||||||||||||||||||| ||  ||||| | || |   |  |||||      ||| |        |||  |  || ||                                      
TAACTTGAAGTATATGGGAATTGATGCCCTGGGTCGGCTTATCAAAATTACGCCAGAGTGTGCCGAAAATCATCAACTGGCTGTCATTGACTGCTTAGAGgt-agcgtctctat-tcctatttattgaag------gatcgcctttcagtgcgaactcttgtag------------------------------------

upper sequence: GLYMA16G20260.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ28010 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatctctttgtcttgaatgctgaagagttaagatggatggcttttgcatagcctggtttcgattttggtcttataaattgttgtatgtttgttcc
|||  | ||||||||||| |||||||| || |||||||| || || || |  ||| |   ||| ||| | |||||||||||||||||||||||||||||||| ||  ||||| | || |   |  |||||      ||| |        |||  |  || ||                                      
TAACTTGAAGTACATGGGAATTGATGCCCTGGGTCGGCTTATCAAAATTACGCCAGAGTGTGCCGAAAATCATCAACTGGCTGTCATTGACTGCTTAGAGgt-agcgtctctat-tcctatttattgaag------gatcgcctttcagtgcgaactcttgtag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193680336|gb|FK624844.1|FK624844
EST:     CCACATGTTGTCTAGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAG                         GACCCTGATGATACTCTGAAGCGAAAAACTTTTGAACTACTCTACAAAATG
genomic: CCACATGTTG-C-AGAACAGCATCAACTGGCTGTCATTGACTGCTTAGAGgtgaggatct ... tatggtgcagGACCCTGATGATACTCTGAAGCGAAAAACTTTTGAACTACTCTACAAAATG