Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGgtaaagctagttcagagggctagctgaatgattgtttcatgatattttgattaaatgtgtcagtgaatgtgttcaaaagagtgtattgctaacatttctctttgattaaatttaatctgtgctaactgaaagtgaatttgaag

Basic information

species Glycine max
transcript GLYMA16G19520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G26150.1 (Arabidopsis thaliana), 5'ss of exon 2
CGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGgtaaagctagttcagagggctagctgaatgattgtttcatgatattttgattaaatgtgtcagtgaatgtgttcaaaagagtgtattgctaacatttctctttgattaaatttaatctgtgctaactgaaagtgaatttgaag
||  ||||| ||||  | ||||||||||||||||| || ||| | ||| | ||| | |||||||||||||| ||| | | |||||| || |||||||| |||||      ||   ||   ||   | |  |       |  | ||||   |||    | ||  |  |||   |  |                                                                   
CGGAATTTGCTTTCTATGGTTGGATACTGCATTTCCGAGAACCGGAGATTGCTTATTTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGgtaagtaagatttctagacataaaagcacaaac-ccaaaccacattt-acttattactatctttccatggtctttag------------------------------------------------------------------

upper sequence: GLYMA16G19520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
CGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGgtaaagctagttcagagggctagctgaatgattgtttcatgatattttgattaa-atgtgtcagtgaatgtgttcaaaagagtgtattgctaacatttctctttgattaaatttaatctgtgctaactgaaagtgaatttgaag
||||||||||| ||  | || || ||||||||||| || | |  ||| || || |||||||| ||||| || ||| ||||||||||||| |||||||||||||| |||          |||  |   |  | | | |  | ||   |   | |  ||||||   |   |||  |    ||                                                                
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaagaatagtttgtggtaatggataactgattatgtgttgctccttgtaatttgtag----------------------------------------------------------------