1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTGAACTGGAGAAGAAACTGAAGTACGCAGGAGATGTTTCTTCCGGAATTATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcag
species | Glycine max |
transcript | GLYMA16G19350.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTEST: gi|208247826|gb|GE045326.1|GE045326
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
EST: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTEST: gi|151394372|gb|EV264243.1|EV264243
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
EST: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACTAG GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAACTGGAGAAGAAACTGAAGTACGCAGGAGATGTTTCTTCCGGAATTATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT