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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgtagttcaattatatcaacatatttactagtatggtagagcttatgcatgatataaagtaaattttcatcctcttgcag

Basic information

species Glycine max
transcript GLYMA16G19310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g28280.1 (Oryza sativa), 5'ss of exon 6
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgt-agttcaattatatcaacatatttactagtatggtaga-gcttatgcatgatataaagtaaattttcatcctcttgcag--
 |||||| |||| ||| | || || | ||| || || || || |||||||| |||||||| |||||||||||||| || || |||||||| || || ||||| ||   |  |   |  |  |      | || |  |    |||| |   |  | || | |   |||| ||      |||   
ACTTAGTGTGTCCAATGCTGATACGAAGGTGGATGATGCTGAATTTGAGGAAAATGAAGTGTATGCAATTGATATTGTCACCAGCACTGGAGAAGGGAAGgtgagaatagctgcttttatttgaaggattgtcttctgtttgctttttttt--tttacatttttttttaattacgacgcacag

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G440820_T02 (Zea mays), 5'ss of exon 1
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgtag---ttcaattatatcaacatat----ttactagtatggtagagcttatgcatgatataaagtaaattttcatcctcttgcag----------------------------------------------------------------------------------
||| ||| | || ||| | || |||| ||||||||| || || ||||| || |||||||| |||||||| ||||| || || ||||||||||| || ||||||     ||   | | |   ||| |     | ||  | |   || |  |   ||  || |    | ||| ||||| |     |||                                                                                  
GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaatcctgtttttttgcatgtgatgcttcttttttttcagtgtctgaccac-attttcgttgaatattcatgccagcccaggttattggacagccttctgccctgccctatgctatcatttttgtcttagttcagttcagcactaaaaaaactattttaacag

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G440820_T01 (Zea mays), 5'ss of exon 1
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgta---gttcaattatatcaacatat----ttactagtatggtagagcttatgcatgatataaagtaaattttcatcctcttgcag---------------
||| ||| | || ||| | || |||| ||||||||| || || ||||| || |||||||| |||||||| ||||| || || ||||||||||| || ||||||     ||   | | |   ||| |     | ||  | |   || |  |   ||  || |    | ||| ||||| |     |||               
GCTAAGTGTCTCCAATGCTGATACAAAGGTTGACGATGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaatcctgtttttttgcatgtgatgcttcttttttttcagtgtctgaccac-attttcgttgaatattcatgccagcccaggttattggacagcct

upper sequence: GLYMA16G19310.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACTAGCACTGGGGACGGCAAGgt-agttcaattatatcaacatatttacta-gtatggtagagcttat-gcatgat----ataaagtaaattttcatcct--cttgcag------------
  | |||     |||| |||| ||| | || || || || || |||||||| || |||||||| ||||||||||| ||||| |||||||| || || ||||| |  |    ||| |     | | ||||  |  ||  |||| || | | |   |    || | ||| | | || |  |  | || |             
TTTGAGTGCTGGTAATGCGGAGACACGCGTAGATGATGCTGAATTTGAGGAAAACGAAGTTTACGCAATTGATATTGTAACAAGCACTGGTGAAGGAAAGgtgaaattttctattttgttctgtatactctgggtgcaagagtttgttgtacattgctgattacgtagaatgtcttagtgacctgaatcgaggtttttta