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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACATTGAGGCTCTATGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTTGAATCAATCCTCTCTTTGgtaagtgtacatttcattcacttactagtttaagggggttatgtaaactttttctcaaagggtgattgtgcaaaattttcag

Basic information

species Glycine max
transcript GLYMA16G19300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0217g00090.t01 (Vitis vinifera), 5'ss of exon 6
AAACATTGAGGCTCTATGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTTGAATCAATCCTCTCTTTGgtaagtgtacatttc----attcacttactagtttaagggggttatgtaaactttttctcaaagggtgattgtgcaaaattttcag---------------
|||  | || ||| ||||||| |||| ||  ||||| ||| | |||||||  |||||||| || ||||||||||| ||| ||||||| ||||| ||| ||||||||  |   |||    ||  |  |||   |||  ||   ||  || ||  || ||| |  |   || | || | || |                    
AAATTTGGATGCTATATGTGGAGAGACAATCCCAGTTTGCCTCATTGGTGTTTTCAGATCATCCAAAGCTAGAGAGAAGGTTGAATCCATCCTGTCTGTGgtaagtaaaatcttcttgaatatatatacatattttgggactttgggtcaagcttatct-actgctcgagtatgaacaactcatttttgcatattttctgg