Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCATTTCAGAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggaccaaaatgattgtcttttgatgttttattgaccatgtgaatagatcagtttcacacttgtgttatatattccggcag

Basic information

species Glycine max
transcript GLYMA16G19270.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234392|gb|AW569730.1|AW569730
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|254339193|gb|GR847910.1|GR847910
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|11413592|gb|BF425603.1|BF425603
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCACGAGCTAGCTGAGCAGATCAAGGACATCTCAGAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|192303525|gb|FG995931.1|FG995931
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|38191192|gb|CF920398.1|CF920398
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTCCAGAAGAGGCAGGAGCCAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|33388247|gb|CA851454.1|CA851454
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|254339194|gb|GR847911.1|GR847911
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|254320942|gb|GR827391.1|GR827391
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|7589011|gb|AW704794.1|AW704794
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|254342034|gb|GR853171.1|GR853171
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|254349082|gb|GR860354.1|GR860354
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|14260041|gb|BG882949.1|BG882949
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|27424668|gb|CA936188.1|CA936188
EST:     TAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|15000946|gb|BI321760.1|BI321760
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|192303524|gb|FG995930.1|FG995930
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: gi|19053736|gb|BM732403.1|BM732403
EST:     GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG                         CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTGCATTTCAGAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggaccaaaatgattgtcttttgatgttttattgaccatgtgaatagatcagtttcacacttgtgttatatattccggcag

- - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA