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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcattcttcataaaatttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttggttaacattattgttttg...

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 2
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcattcttcataaaat---ttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttggttaacattattgttttg
  ||||     ||   ||  | | ||| ||||| |||||| ||||||| || ||||||||  ||||| ||| |||| ||||||||||||||||||||  | || || ||||| |  |   |||   ||  ||||  |   |    | |   | |  |  | ||    |  |    |   || |||  |  | ||      ||  
TACTGCACCGGCTAACTCGCAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTG-GTTGCTCTTACTACAATTGTTGGATCTGTGCTTTTCACGgtgagttcattttcaactcaatggtttgttttatgtacattttgtgtataggtattgctctgttcaaattcgccaaattttttt--tagatatggaaagttg-

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 4
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcattcttcataaaat---ttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttggttaacattattgttttg
  ||||     ||   ||  | | ||| ||||| |||||| ||||||| || ||||||||  ||||| ||| |||| ||||||||||||||||||||  | || || | ||| |  |   |||   |||  |||   |  |   |  |   | |  |    ||    |  |||    | || ||| |   ||||  |   ||  
TACTGCACCGGCTAACTCGCAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTG-GTTGCTCTTACTACAATTGTTGGATCTGTGCTTTTCACGgtgagtttattttaaacttaatggtttacgttatgggcatttttggtataggtattgccctgttcaaattttcctaggttttttag---acatggtaagttga

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 4
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcat-tcttcataaaat---ttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtttgg--ttaacattattgttttg---------------------------------------------------------------------------------
  | |||| | || | || || || |||||| ||||||||||||| ||||||||||||||| ||||| |||||||| || ||||| || ||||| ||  | ||| |  ||| |||  || |  |   ||   |||   ||||||   |   ||  ||||    ||||||   | ||   | | ||  |  ||     | || | |||                                                                                 
TACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTT-GTTGCTCTTGCTACAATCGTTGGGTCAGTGCTCTTCACGgtatgtacatctctctattaggtgttttgtgttaaaagtttca-cctcattg--tcttggaaggcatataatctttctcatattaaggcttggttgtgttctcttgcagttaaaagacttttggtagctgtgattttttgctttcctctaaagattctgagaaactcttttatctcaaatgttgtag

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 4
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcattcttcataaaatttaatt--tacctgtttcaattttcctgcttcttatttggcataggtttttagg-cttgtttggttaacattattgttttg
  | |||| |||  |||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| || |||||||| || || |||||  | ||| |  |||| ||| |  |  || |    | | |  ||   |||    |  | | || || | ||  || ||    |||  |||  |||||  |    |   
TACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGTT-GTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGgtatgaccattgttctttcatgttgagaagtgcattgtttgctttgaaaggatttaatctgtcttatattgttgattcttcattgactaacacaaactct---

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 4
-TCTGCTAGTCCTTCATCAGAGAAAACATGGACCATGCGTACTACCTTTCCAGAATATGTTTGTTGCACTTGCTACTATTGTTGGATCTGTGCTTTTTGCTgtaagctcattcttcataaaatttaatttacctgtttcaattttcctgcttcttatttggcataggtttttaggcttgtt-tggttaacattattgttttg
 ||||| ||| ||||||| |||||||||||||| ||||| ||||| ||||||||||||||| ||||| |||||||| ||||| |||||||| |||||  ||||| | |||||| |   |||  || | |    | ||| |  ||    | | ||  | |  ||      || |   | | |    ||   | | | || || 
TTCTGCAAGTGCTTCATCTGAGAAAACATGGACTATGCGCACTACTTTTCCAGAATATGTT-GTTGCTCTTGCTACCATTGTCGGATCTGTACTTTTCTCTgtatgttcattcct-gcaaacctttaatcctttatttaatgttctgagttactcttgttacacttaccttaaatgtagatacaattttaaatgtggtattc