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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTCAAGCAGAGCTTATTGGAATTTGGGAGAAACTTATTGGAAAGGAACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgtacataacttttcgtattttgttgatcctaatccaaatcgccttcaaggtaagaaatacacaaccaacaggataggatcacatacaagata...

Basic information

species Glycine max
transcript GLYMA16G17680.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397241|gb|EV267114.1|EV267114
EST:     ACTAGAGAAGACGTACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|209718226|gb|BW657845.1|BW657845
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|17401324|gb|BM178106.1|BM178106
EST:     TAGAGAAGA-ATACATACCTCCCAGA-GGCTTTCTTANCAACACTGAAAG                         GGGTGGATTATAAACTTCAAGTAGGGATTGGA
genomic: TAGAGAAGACATACATACCTCC-AGAAGGCTTTCTTA-CAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGA
EST: gi|10845696|gb|BF068758.1|BF068758
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|17519561|gb|BM188603.1|BM188603
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGG
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGG
EST: gi|209703310|gb|BW653241.1|BW653241
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|298166324|gb|HO009295.1|HO009295
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATT
EST: gi|192314101|gb|FK011473.1|FK011473
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTTT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|16348077|gb|BI973672.1|BI973672
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAA                         GGTTGGATTAT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTAT
EST: gi|58024852|gb|CX711593.1|CX711593
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
EST: gi|8283595|gb|BE021154.1|BE021154
EST:     ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAG                         GGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT
genomic: ACTAGAGAAGACATACATACCTCCAGAAGGCTTTCTTACAACACTGAAAGgtaattatgt ... tgatttgcagGGTTGGATTATAAACTTCAAGTAGGGATTGGACACTTTTATCATATATTCT