Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAGCGCATGTCTAATGTCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGGgtattactcttactgttgagtgttatcttgctttttaaggtttgatatctgttcgattaatggcattaagaaattatttcgtagaatgatttaaaatggt...
Basic information
species | Glycine max |
transcript | GLYMA16G17320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G17320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G129071_T01 (Zea mays), 5'ss of exon 5
TGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAGCGCATGTCTAATGTCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGGgtat--tact-cttactgttgagtgttatcttgctttttaaggtttgatatctgttcgattaatggcattaagaaattatttcgtagaatgatttaaaatggt
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AGTGGGTTGGAGCAGCGACGTGATCCCTGCTGCAAAGCGAATGTCTAATGTCGCGGTGGTTGTTCCCAAGTCAGGCAGCAGCCTATGGGCTGATCTATGGgtatgctatgactttctcatgtataatgcattgccattatgaactatacatcttattgatttcta-taccctgtag---------------------------
upper sequence: GLYMA16G17320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00180.t01 (Vitis vinifera), 5'ss of exon 6
TGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAGCGCATGTCTAATGTCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGGgtat-tactcttactgttgagtgttatcttgctttt-taaggtttgatatctgttcgattaatggcattaagaaattatttcgtagaatgatttaaaatggt
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TGTTGGGTGGAGTAGTGATGTCCTTCCTGCAGCCAAACGCATGTCTAATGTTGCAGTAATTGTTCCTAAGTCTGGAGCTAGCTTATGGGCAGATCTTTGGgtatgtcctgatttcatctcataatactatgcatttactttctttcttcacagtgtgttgatcttcgcctataaaaaagaaaaacaaaaaccctaatata--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51338004|gb|CO981870.1|CO981870EST: TCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGG GCAATTCCTGCTGCCTCTAGGATTCAAACAAATCGGATTGGTGGACGCATC
genomic: TCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGGgtattactct ... gttttcccagGCAATTCCTGCTGCCTCTAGGATTCAAACAAATCGGATTGGTGGACGCATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGGATGGAGTAGTGATATTATTCCTGCTGCTAAGCGCATGTCTAATGTCGCTGTTGTTGTTCCAAAGTCCGGAGCGAGTTTATGGGCAGATCTTTGGgtattactcttactgttgagtgttatcttgctttttaaggtttgatatctgttcgattaatggcattaagaaattatttcgtagaatgatttaaaatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT