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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctctttctgcaaaatggcaactataaagagtctttaccaactctagaaaacattcatttcattttttattttatttgtatgttcctttttatat...

Basic information

species Glycine max
transcript GLYMA16G17190.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305159|gb|FG993939.1|FG993939
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|6134368|gb|AW132761.1|AW132761
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|7924546|gb|AW830572.1|AW830572
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|6567013|gb|AW234640.1|AW234640
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|27425520|gb|CA937040.1|CA937040
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|37995287|gb|CF806876.1|CF806876
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|4314114|gb|AI461233.1|AI461233
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|213594458|gb|DB970024.1|DB970024
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
EST: gi|8283603|gb|BE021162.1|BE021162
EST:     TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAG                         GGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT
genomic: TCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctct ... tttgttttagGGAGGAGGATGGTGCAACAACGTTACTACTTGCCTTTCCCGTAGGGACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATAGTTCACTTTGAGgtatatctctttctgcaaaatggcaactataaagagtctttaccaactctagaaaacattcatttcattttttattttatttgtatgttcctttttatat

- - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG