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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGgtacaacgaagttctgtcaaaaaaaaaaaaaccacttaatcattgtgcattcatgtatggatccttttcctcaactcctttgtacaatggtctttgattacctgatgaccacaccccattgaagtttaactttatctattcatttatatag

Basic information

species Glycine max
transcript GLYMA16G14750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G14750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g46580.1 (Oryza sativa), 5'ss of exon 3
----CTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGgtacaacgaagttctgtcaaaaaaaaaaaaaccacttaatcattgtgcattcatgtatggatccttttcctcaactcctttgtacaatggtctttgattacctgatgaccacaccccattgaagtttaactttatctattcatttatatag
    | || |||||     | || ||||||||||||||||||| |||||||||| | |||||| | || |||||  || ||||||||||| || || ||||| | |       || || ||    |     ||| |   |  |||||| | ||||  || ||    |        | || |||||  ||   | | ||    ||||                                             
AAGGCAGCTTATGGACCAGTCGTTCAAATTCTTGATCCTCCAAAGGATGGCTTTGATCTCACAATGAAGATAAACTTGACAAAGCTTCCGCCAGATGAAGgttctagagttccctttccaaggtta-----ccattgtcttgttgtgc-tacatgattgaattagatgat---ggttctatgtaccttgagatgtcatccattgataga------------------------------------------

upper sequence: GLYMA16G14750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 4
----CTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGgtacaacgaagttctgtcaaaaaaaaaaaaaccactta--atcattgtgc--attcatgtatggatccttttcctca-actcctttgtacaatggtctttgattacctgatgaccacaccccattgaagtttaactttatctattcatttatatag
    || ||||||||   || || |||||||||||||||||||  || ||||| || |||||||| ||| | ||| ||||||| |||||  || || ||||| |||| |  |||| |   ||    |  |    |||   ||   | |||  |  ||| || | |   |||  | || | |    | ||||    |  |                                                         
AAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc--------------------------------------------------------