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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatttgccaattattattagagcctgtaaaagtttaggggcaatcctgtgtttctcctttgtttttaagtgtgtggctttgtttctggacaataaaga...

Basic information

species Glycine max
transcript GLYMA16G13410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G17730.2 (Arabidopsis thaliana), 5'ss of exon 3
TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatttgccaattattattagagcctgtaaaagtttaggggcaatcctgtgtttctcctttgtttttaagtgtgtggctttgtttctggacaataaaga
|||| || ||||||||||||||||| ||||| || |||||||| ||||| || ||||| |  ||  ||||| |||| |   |  ||   ||||| || |||| | |   || | ||  ||   |  |       ||| | ||   |  ||| ||  |    ||  |||     ||| |                      
TTCAAGCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATATGCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGgttaatgctcattgatggtttatgtttac-----ttttgtggtt-ttgtgtattgatttcctggctttggtaatgtag----------------------

upper sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g01850.t01 (Vitis vinifera), 5'ss of exon 3
TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatt-tgccaattattattagagcctgtaaaagtttaggggcaatcctgtgtttctc---ctttgtttttaagtgtgtggctttgtt---tctggacaataaaga
|||| ||||| || ||||||||||||||||| ||||| || ||||| || |||||||| || || |||||||||||||| ||  |||| |||||||| |||| ||| |   || | ||||| |     || |   |||  |  |||     |   | ||    ||  |    || |||   |  ||      ||||    ||     
TTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGgtaattattgtaagtcttatttg---tagttagtttttgtgcacaacatattagctgtcaattttaatcaccaaatgttgagtcttacaaaatctgcctgatt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328508|gb|GR835473.1|GR835473
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatttgcc ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|254328051|gb|GR835016.1|GR835016
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatttgcc ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|7795796|gb|AW781193.1|AW781193
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAGgtgatttgcc ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG