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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttttcattcacttccgttttgtcttgtcattcaagcttttttgtcctcaagttcgaccgttgattttgtttatttcatttgtctgaatttactt...

Basic information

species Glycine max
transcript GLYMA16G12080.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G444643_T01 (Zea mays), 5'ss of exon 4
TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttttcattc---acttccgttttgtcttgtcattcaa-gcttttttgtcctcaagttcg---accgttgatt-ttgtttatttcatttgtctgaatttactt-------------------------------------------------------
||||  | || ||||||||||| ||||| || || ||||||||||| |||   |||||||||||||||||  |||| |||||||| |||||| | || |||||| ||  | ||     |   | |||   | |||| |||    |  |||    | |||   |     | | ||| || ||  ||| ||| ||| ||| | |   ||                                                        
TTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTGTCAATGTCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttccttatcttgaataactgttagattttgttattttgtgaatttgcaacatcattcttagtcatcattgcttatttgttaattcctttttctaactcatctcataattcatagacaatttttttaacaatcttctgatcttctccttggtcaaccag

upper sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G170868_T01 (Zea mays), 5'ss of exon 3
TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttttcat------tcactt----ccgttttgtcttgtcattcaagcttttttgtcctcaagttcgaccgttgattt-tgtttatttcatttgtctgaatttactt------------------------------------------------------------------
||||  | || ||||||||||| ||||| || || ||||||||||| |||   |||||||||||||||||  | || |||||||| |||||| | || |||||| ||| | ||      | ||||    | ||| | || ||   ||  | | |  ||||       |  ||    |  ||  |  | ||| |   | | | |||||  ||                                                                  
TTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTGTCAATGTCACATCATGTTGCTACTGTCGTCCTGATTGTTCTATCTTACGTGTTCAGgtatgtttcttatcttgaataacttttagctgttgtttcatgaatttgcaacatcattgtatcagtataggagaacttcttagtcatcattgctgatttgttaatttctttttctaactcctttcataattcgtagacaatgttttaactaaaatcttcttttccttcgtcaaccag

upper sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttt--tcattcacttccgttttgtcttgtcattcaagcttttttgtcctcaagttcgac-cgttgattttgtttatttcatttgtctgaatttactt--
||||| |  | || |||||||||||||| || ||||||||||| || ||| |||||||| |||| ||| | |||||||||||||| || ||| | | |||||||  ||   || |    | |  || | |  ||  |  ||    |  ||    |      |      ||||| || ||  ||   ||| |||  ||     |  
TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag

upper sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 3
TTGCTTTAATATTTTGGGAAACGAGGCGCTCCGATTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatctttttcattcacttccgttttgtcttgtcattcaagcttttttgtcctcaagttcgac--cgttgattttgtttatttcatttgtctgaatttactt--
||||||| || ||||||||||| ||||| || |||||||||||||| ||| |||||||||| || ||| | ||||| ||||| ||||||||||| || |||||| |||  ||     |    || |  |||| |||    | | |     ||  ||    ||    || | ||      | || |  | | | || | |     
TTGCTTTGATTTTTTGGGAAACAAGGCGGTCTGATTTTGGAGTGTCAATGGGTCATCATGTGGCAACTTTTATTCTCATTGTGCTGTCTTACATATTCAGgtatgtttggcagaagttcagcttgtagcttggcat----gttctgaacaccataaccatgaggatgtgggttcataccaatttacctatttaaagtaaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324720|gb|FK016851.1|FK016851
EST:     AGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAG                         CTATGAAGTTCTGCTCACTTTGGATAAAGAAAAGCACCGAGTGGATGGTCC
genomic: AGTCATCATGTTGCTACTGTAATTCTTATTGTTCTGTCTTACATTTTTAGgtatcttttt ... tttttaccagCTATGAAGTTCTGCTCACTTTGGATAAGGAAAAGCACCGAGTGGATGGTCC