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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGTGTGAAGGACATATGTAAGGATGGAGGCTTATTTAAGAAGATACTTACCGAGGGAGAGAAATGGGAAAACCCCAAGGATCCTGATGAAGTTTTAGgtatacatatttgttaaatatttcattttctgtttgattattgtattattaaacttagtcttgactattaaatgcactcatggtgttgcag

Basic information

species Glycine max
transcript GLYMA16G10730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10730.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G25230.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTAGTGTGAAGGACATATGTAAGGATGGAGGCTTATTTAAGAAGATACTTACCGAGGGAGAGAAATGGGAAAACCCCAAGGATCCTGATGAAGTTTTAGgtatacatatttgttaaatatttcattttctgttt----gattattgtattattaaacttagtcttgactattaaatgcactcatggtgttgcag
   ||||||||||| |||||||| ||||| ||  | ||||||||||| ||| | |  |||||||| ||||| || || ||||| | |||||||||| | ||| |       |||| | | | | ||   ||| ||    | ||  ||| |  || |  ||  |   |  | ||   ||      || |  | |||
GACAGTGTGAAGGATATATGTAAAGATGGTGGTGTGTTTAAGAAGATTCTTGCTGTTGGAGAGAAGTGGGAGAATCCAAAGGACCTTGATGAAGTTCTTGgtgtg------tgttcactctcttatggcctgctttagaggttggtgtgtgtttgattttgctaacgg-tgtttcctgtgtatttgttaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684632|gb|AW755280.1|AW755280
EST:     TCCTGATGAAGTTTTAG                         TGAAGTATGAAGCACATCTTGAGGATGGAACTCTTGTGGCTAAATCTGATG
genomic: TCCTGATGAAGTTTTAGgtatacatat ... ggtgttgcagTGAAGTATGAAGCACATCTTGAGGATGGAACTCTTGTGGCTAAATCTGATG
EST: gi|23731786|gb|BU764037.1|BU764037
EST:     TACCGAGGGAGAGAAATGGGAAAACCCCAAGGATCCTGATGAAGTTTTAG                         TGAAGTATGAAGCACATCTTGAGGATGGAACTCTTGTGGCTAAATCTGATG
genomic: TACCGAGGGAGAGAAATGGGAAAACCCCAAGGATCCTGATGAAGTTTTAGgtatacatat ... ggtgttgcagTGAAGTATGAAGCACATCTTGAGGATGGAACTCTTGTGGCTAAATCTGATG