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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctctctcgtttcagtttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcag

Basic information

species Glycine max
transcript GLYMA16G08380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
TTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctctctcgtttcag--tttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcag
|  | ||||| || || |||   || || |||||||||||||||||||| || || ||| | |  || |||||||| ||||| ||||||||  ||||||||| ||| |   |    |||   || ||  | | |  ||    ||  |||| ||   |||   |          ||      |||||   ||||                                                                           
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaat-gtgaaaatttgtaatataaagtttcaatcttttgatggtcttcttctttgt-atacag---------------------------------------------------------------------------

upper sequence: GLYMA16G08380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G19185.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctctctcgtttcagtttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcag
| || ||||| || ||  | |  || || ||||| |||||||||||||| ||||| ||| |||  || ||||| || ||||| |||||||| |||||||||| ||| |   || ||  |     |   |  | |  | |    | | |||   ||||||       |   ||||      ||| |   |||                                                                           
TGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGgtgagtatgattctttataagggttctcttcttagatatgccttcagttttggttttttg------atgtctcc---tacttggtatgcag---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286457|gb|BI470348.1|BI470348
EST:     ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGG                         TACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGG
genomic: ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctct ... attcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGG
EST: gi|192323502|gb|FK016393.1|FK016393
EST:     ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGG                         TACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCA
genomic: ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctct ... attcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCA