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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatgtattattattagagcctgtaaaagtttaggggaaatcctgtgtttctcttttgtttttaagtgtgtggcttcgttttttgaacaatgaag...

Basic information

species Glycine max
transcript GLYMA16G08200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08200.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G17730.2 (Arabidopsis thaliana), 5'ss of exon 3
TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTC-CTTCCTTCGAGgtgatttatgtattattattagagcctgtaaaagtttaggggaaatcctgtgtttctcttttgtttttaagtgtgtggcttcgttttttgaacaatgaag
|||| || ||||||||||||||||| ||||| || |||||||| ||||| || ||||| |  ||  ||||| |||| ||||||||  || ||||| || ||||   | |||  | |||  | |    |||  |  |||  ||    |  ||| ||  | |  ||  |||     ||| |                      
TTCAAGCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATATGCTCCTCTTGT-CCACAAGCCATCTCTTCCCTCAAGgt---taatgc-tcattgatggtttatgtttacttttgtggtt--ttgtgtattgatttcctggctttggtaatgtag----------------------

upper sequence: GLYMA16G08200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g01850.t01 (Vitis vinifera), 5'ss of exon 3
TTCAGGCAGTGTTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatgtat-tattattag-agcctgtaaaagtttaggggaaatcctgtgtttctcttttgtttttaagtgtgtggcttcgttt--tttgaacaatgaag
|||| ||||| || ||||||||||||||||| ||||| || ||||| || |||||||| || || |||||||||||||| ||  |||| |||||||| |||| |||  ||||  | ||||| | ||   ||    ||  |    | ||    |||   | |||  |    || |||   |  |       | ||    ||    
TTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGgtaattattgtaagtcttatttgtagttagtttttgtgcacaacatattagctgtcaat-tttaatcaccaaatgttgagtcttacaaaatctgcctgatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666502|gb|AW277896.1|AW277896
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|9564950|gb|BE474459.1|BE474459
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|193511651|gb|FK470446.1|FK470446
EST:     CTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: CTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|298189796|gb|HO038199.1|HO038199
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTGGATGTTGGTTCT
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCT
EST: gi|298185952|gb|HO031113.1|HO031113
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCGCCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|15662381|gb|BI699752.1|BI699752
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|37994080|gb|CF805826.1|CF805826
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|7686453|gb|AW757101.1|AW757101
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|209725412|gb|BW651556.1|BW651556
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|208146298|gb|GD948403.1|GD948403
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|193476691|gb|FK439538.1|FK439538
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|298196583|gb|HO041326.1|HO041326
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTGGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|21888894|gb|BQ742107.1|BQ742107
EST:     TTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: TTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|151398998|gb|EV268869.1|EV268869
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|192299164|gb|FG992895.1|FG992895
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|207829398|gb|GD804016.1|GD804016
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCTCAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGT
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGT
EST: gi|209702008|gb|BW683185.1|BW683185
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|192296912|gb|FG990258.1|FG990258
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|192315290|gb|FK009610.1|FK009610
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|19452417|gb|BM953827.1|BM953827
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATA-GTCACCAGAA
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAA
EST: gi|10254732|gb|BE822498.1|BE822498
EST:     AGGGAAACAGCGTACACTNNNNTTGTTCCACAAGCAGTNNNNNNNTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGNTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|21255947|gb|BQ452835.1|BQ452835
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
EST: gi|9565390|gb|BE474899.1|BE474899
EST:     AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAG                         CTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG
genomic: AGGGAAACAGCGTACACTCCTTTTGTTCCACAAGCAGTCCTTCCTTCGAGgtgatttatg ... tggtttgcagCTATACAGCTAGCGAAGTAGATGTTGGTTCTGATAAGTCACCAGAACAGCG