Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAAGGTGATATATGGGCTTCTCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAAATTTCAAAAGCATAAGTTGGCTCCTGTAGAGgtaggttgtttttagtagacactgtaaaacccttatgctgtgtttgtttgagggagggggagagtaataatgttggttttatgtggatgccttgtacactatactttaattcaaatatttttcttctattttcatcctctaaaccaaacacaacattatagtgtttatgagagcatgtgaactgaaattgcag

Basic information

species Glycine max
transcript GLYMA16G08170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00180.t01 (Vitis vinifera), 5'ss of exon 4
TCCTAAAGGTGATATATGGGCTTCTCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAAATTTCAAAAGCATAAGTTGGCTCCTGTAGAGgtaggttgtttttagtagacactgtaaaacccttatgctgtgtttgtttgagggagggggagagtaataatgttg---gttttatgtggatgccttgtacactatactttaattcaaatatttttcttctattttcatcctctaaaccaaacacaacattatagtgtttatgagagcatgtgaactgaaattgcag
| || ||||| | ||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||  |||||| |||||||||| ||||||||| ||||||||  || ||||||| |     | | | |   ||||  | | ||| ||     ||     | |  || |  ||||   ||  ||| ||   |   |||| |  |                                                                                            
TGCTGAAGGTAAAATATGGGCTGCTCCATATCGATGGGGAAGCATGGTGATAGCATACAAGAAAAGCAAATTTGAAAAGCATAAATTGGCTCCTATAGAGgtaaattatttttagaa----ttttgatagttttatcgtatctttattgtcttgaaatcaatatcaagatggttgtctgtcctatttgttggatatgtatataa--------------------------------------------------------------------------------------------