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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagactttttgtcataaacaaaaatctatcacttacaacctgctagctacttcaaaattgttgaagatggcttgatgtgactggactgtgtcctttaa...

Basic information

species Glycine max
transcript GLYMA16G06850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagactttttgtcataaacaaaaatctatcacttacaacctgctagctacttcaaaattgttgaagatggcttgatgtgactggactgtgtcctttaa
|||||  |    ||||||||||||||||| ||||| ||||||||||  || ||  ||||||| ||  | ||| |     | ||||||| |||   |  |       |      || |   || || |   |   | |    ||  || |   |    | || ||||                    
GGATTTCTTAATCCAGATGAAGTTCATATATTTGGATATGCAAGGAGTAAGATTACTGATGAGGAGCTTAGAGATAAAATCCGCGGgttagatgatccgatccggtc---cgcctttttgttgcatctgac--acaatgaaaagcttatattatcatgttttatgtag------------------

upper sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagactttttgtcataaacaaaaatctatcacttacaacctgctagctacttcaaaatt---gttgaagatggcttgatgtgactggactgtgtcctttaa
|||||  |    |||||||||||||||||||| || ||||| ||||| || || |||||||| ||  ||||| |  || | || |||||||   ||   | |   |        | | | |   ||| ||  ||    |||||| ||    ||||| | |  || |||                     
GGATTTCTCAATCCAGATGAAGTTCATATTTTCGGGTATGCGAGGACTAAGATTTCTGATGAAGAGCTGAGAGATAGGATTCGTGGgtgag---ttcaattagccatttggtattttgattattaacttgtgag----ttcaaagttcatattgaata-gtttttatgcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268946|gb|BM885202.1|BM885202
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|21637841|gb|BM107996.1|BM107996
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAN
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAG-AAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAG
EST: gi|192310375|gb|FK002255.1|FK002255
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|33390099|gb|CA853306.1|CA853306
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|11273943|gb|BF324331.1|BF324331
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|16348194|gb|BI973789.1|BI973789
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|254331186|gb|GR843305.1|GR843305
EST:     GCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: GCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|19453077|gb|BM954487.1|BM954487
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|9986040|gb|BE660148.1|BE660148
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|213607767|gb|DB959106.1|DB959106
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|213608230|gb|DB970827.1|DB970827
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|37995559|gb|CF807148.1|CF807148
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: gi|15663680|gb|BI701051.1|BI701051
EST:     TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG                         CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA