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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttgtccgtctggctgaatatatgactgacttgatctggacatttttgttcctaatggcataattgttctgacaaggctaaatttaactttgga...

Basic information

species Glycine max
transcript GLYMA16G05600.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05600.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33520.1 (Oryza sativa), 5'ss of exon 4
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgta--agatttgtccgtctggctgaatatatgactgacttgatc-tggacatttttgttcctaatggc-ataattgttctgacaaggctaaatttaactttgga
||  | || || ||||| ||||| || || || || ||||| ||||||||||||||||||||||||||   ||| ||||| |||  |||  |       ||    | ||  |  ||   |   || | ||| | |  | |  |  |  |   || ||||    ||  |     ||  | ||    
GTTGTCAGTAACCCAGAGAAGACACCGCTACATACCTTCTTCTGCAACTATGATTTGAGTGACATGCCTGCTGGAACCAAGgtatgagaaattgagaattgttatattacttttctttttgcctcatagacttatacgctggtggtaactgcaaatgtttctgcattgtc---ttggagttcct-

upper sequence: GLYMA16G05600.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T03 (Zea mays), 5'ss of exon 1
-------------------GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaa--gatttgtccgtctggctgaatatatgactgacttgatctggac--atttttgttcctaatggcataattgttctgacaaggctaaatttaactttgga
                   ||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |      | |   | | ||      |   |     ||||   || |||||   |        || ||||  ||  ||| | |     |  | | |
AAAAAAATGACTTTGACAGGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacgctctta--tgaccttggattaatatttgtcattgcgactgaaaatgttgggattagggtta--cggaggtagca

upper sequence: GLYMA16G05600.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T01 (Zea mays), 5'ss of exon 3
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaa--gatttgtccgtctggctgaatatatgactgacttgatctggacatttttgttcctaatggcataattgttctgacaaggctaaatttaactttgga
||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |      | |   | | ||      |    ||| || |  |||  | ||  | || ||         |||| || | |    |||        
GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacgctctta---tgaccttgg-attaatatttgtcattgcga-------ctgaaaatgttgggattag-------

upper sequence: GLYMA16G05600.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138425_T02 (Zea mays), 5'ss of exon 4
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaa--gatttgtccgtctggctgaatatatgactgacttgatctggac--atttttgttcctaatggcataattgttctgacaaggctaaatttaactttgga
||| ||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||   ||| ||||| |||   || |      | |   | | ||      |   |     ||||   || |||||   |        || ||||  ||  ||| | |     |  | | |
GTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGgtacacgaatgactaatatttttcattacgctctta--tgaccttggattaatatttgtcattgcgactgaaaatgttgggattagggtta--cggaggtagca

upper sequence: GLYMA16G05600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g01450.t01 (Vitis vinifera), 5'ss of exon 3
GTGCTAAGCAATCCAGAAAAGACTCCTCTTCACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttgtccgtctggctgaatatatgactgacttgatctg---gacatttttgt-tcctaatggcataattgttctgacaaggctaaatttaactttgga
|| || ||||||||||| ||||| || || ||| | ||||||||||||||||||||||||||||||||   ||||||||||||||| || |   |  |    || | | |      ||| || ||   ||||  || || |||| |     |  ||    ||       ||  || |  ||| | 
GTTCTCAGCAATCCAGAGAAGACACCCCTACACTCGTTCTTTTGCAACTATGATTTGAGTGACATGCCAAGTGGTACCAAAgtaag-ttggaatgattactggattgttttctatgctttatttgttagacagattggtgtcctgacctttttcttaagatgttggaattatcttca--tttag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207694695|gb|GD676554.1|GD676554
EST:     ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
genomic: ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
EST: gi|10236779|gb|BE805667.1|BE805667
EST:     ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA                         ACATTCTTGCGCCAGAAAGTTACTCTTGAATTGACTGGCTCTACT
genomic: ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACT
EST: gi|208095431|gb|GD896627.1|GD896627
EST:     CACTTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
genomic: CACTTT-CTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
EST: gi|192312930|gb|FK005486.1|FK005486
EST:     ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGATTGGTACCAAA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
genomic: ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
EST: gi|10236805|gb|BE805693.1|BE805693
EST:     ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATTGACTGGCTCTACTTCCCCT
genomic: ACACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
EST: gi|193477085|gb|FK439582.1|FK439582
EST:     TTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACC-AA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
genomic: TTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTACCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCCT
EST: gi|208117929|gb|GD915077.1|GD915077
EST:     CACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTAACCAAA                         ACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCC
genomic: CACTTTCTTTTGCAACTATGATTTGAGTGACATGCCGTTTGGTA-CCAAAgtaagatttg ... atccacacagACATTCTTGCGCCAGAAAGTCACTCTTGAATCGACTGGCTCTACTTCCCC