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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttccgtttcataatcaatctctgatctgcgttttcttttatattttatattaccatgttattggtatggagtatcattgtctttgtcgatcactaatcttcgtcggagaaactggttggccacctctggtggggtctcccttcccagccattttttatctgtctttttttattggttcag

Basic information

species Glycine max
transcript GLYMA16G05470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 3
ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttccgtttcataatcaatctctgatctgcgttttcttttatattttatattaccatgttattggtatggagtatcattgtctttgtcgatcactaatcttcgtcggagaaactggttggccacctctggtggggtctcccttcccagccattttttatctgtctttttttattggttcag
|||||||| || | ||||| ||||| |||||| | |     ||  |||| |||||  ||||||||||||||||||||||||||||  ||||| | || |||   ||       | |  |  | |||   |||  | |   | ||     ||  |   | |  ||||  | |   |                                                                                                                
ACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACGGCGTCCCCGTCGACACCTACCTCACTAGgtctgctgcaaactgccaaccccatcg--gatgggtgccctgttcagc-ttaaaagcttctgtgttgatcgcgcgcgcag-----------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716470|gb|BW653884.1|BW653884
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|209711508|gb|BW681444.1|BW681444
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|213602669|gb|DB956605.1|DB956605
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|298191152|gb|HO038631.1|HO038631
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGGGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|16105980|gb|BI893720.1|BI893720
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|207747400|gb|GD718425.1|GD718425
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|213620335|gb|DB961480.1|DB961480
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|213587989|gb|DB957448.1|DB957448
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|19452653|gb|BM954063.1|BM954063
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|213602677|gb|DB956613.1|DB956613
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT
EST: gi|298194575|gb|HO043047.1|HO043047
EST:     ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAG                         GTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTGGAAGGAGAT
genomic: ACCGGCGCCCTCACCGTCGACGGCGTCCCCGTCGATTCCTACTTGACCAGgctcgccttc ... attggttcagGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGAT