Sequence
atgc intronic sequence ATGC exonic sequenceGATAACAGGGGGCTTGGACTCACTGCACATGTTATTGACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatttccattaattgcaaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcag
Basic information
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATGTTATTGACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatt--tccattaattgcaaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcag
| | ||||| ||||| ||||| ||| || ||||||| |||||||| || |||||| || ||| |||| |||||||||||||||||| || | | ||| | ||| | |||| | || ||| |||| | | || || | | | ||| | || | ||| ||||
GCAAGAAGGGGACTTGGCCTCACAGCAGATATTATTGATCATTGCAAGCTAGTCCTTAGATTTCCTAAAGGAACCAACAGCACTTGGgtaagtat-tccctgtcatgttcacatgcagtt---acttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcag--------------------
upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 3
GATAACAGGGGGCTTGGACTCACTGCACATGTTATTGACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatttccattaattgcaaattg--ctgatttttttttttttggtttatttttcaatgtgtcaatgattgcag
| || ||| || ||||| ||||| |||||| ||||||| || ||||| | ||||||||| |||||||| ||||||||||| ||||| || | || || | || || || || | || || || || | || | ||| |||| | | || || | || |||| ||
GCTAGCAGAGGACTTGGTCTCACAGCACATATTATTGATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattcctcccattttta-----tggtcaatggatgctattcctc-atccagaatc-atgatttaaatattcatctgagatgatattcttgagctt-ttttgcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207811864|gb|GD783113.1|GD783113EST: ACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGG TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
genomic: ACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctct ... atgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATAACAGGGGGCTTGGACTCACTGCACATGTTATTGACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatttccattaattgcaaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG