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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCACAAGGGTAACCTCTCCTATCCTAATTGCAGTTACAAGGCGAGGAGGAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgtgtcaactaactaactaactaactaactagtgtggtttctaggatttggttgcttgaagaaatggttacttgtgaaagcaaggaactgagt...

Basic information

species Glycine max
transcript GLYMA16G05140.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715003|gb|BW650854.1|BW650854
EST:     GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGG
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGG
EST: gi|19453447|gb|BM954857.1|BM954857
EST:     GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: gi|151409476|gb|EV279284.1|EV279284
EST:     GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: gi|6747878|gb|AW318334.1|AW318334
EST:     GAGCCACCGTNTAGTTTTTGCTTCTATGCACACACCACAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: gi|209701860|gb|BW664565.1|BW664565
EST:     GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: gi|23056166|gb|BU577706.1|BU577706
EST:     TTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: TTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: gi|17400397|gb|BM177179.1|BM177179
EST:     GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG                         ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA