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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTTTCTCTGGTTTGATCCCACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtcccctcaaaaccccacatcttgtcaatgagtactatactatgcttaataacataataaactaacaaaagtgatagagttgataagggttgt...

Basic information

species Glycine max
transcript GLYMA16G04960.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298568|gb|FG988524.1|FG988524
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192323920|gb|FK015671.1|FK015671
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTG-ATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192296733|gb|FG993031.1|FG993031
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|16349545|gb|BI975140.1|BI975140
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|10239018|gb|BE807906.1|BE807906
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192308008|gb|FG998991.1|FG998991
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|21677268|gb|BQ629619.1|BQ629619
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|9898982|gb|BE607950.1|BE607950
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGGCT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGG-CT
EST: gi|18734985|gb|BM528499.1|BM528499
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCANATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192307523|gb|FK002041.1|FK002041
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192327911|gb|FK022456.1|FK022456
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAA
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAA
EST: gi|192296130|gb|FG989490.1|FG989490
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTGGATAACATCCCAATAAGGGTGCTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
EST: gi|192324285|gb|FK018261.1|FK018261
EST:     ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGT                         GTTCCTAGTG-ATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT
genomic: ACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtc ... ttgcacacagGTTCCTAGTGGATAACATCCCAATAAGGGTGTTCAAAAACCTAAAGGGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTTTCTCTGGTTTGATCCCACAAAAGCATACCACAGATACTCTGTGCTGTGGAACATGTATCAAATTGTgtaagtagtcccctcaaaaccccacatcttgtcaatgagtactatactatgcttaataacataataaactaacaaaagtgatagagttgataagggttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accccac