Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGGCAAGGGTGATAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacacttcactcaaactctttcatacccttttttcatttttcaccctttcttggaaatcccagtcttatacttaaaaataatgtatataaatgga...

Basic information

species Glycine max
transcript GLYMA16G04950.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324897|gb|FK015378.1|FK015378
EST:     ACGAAAGAATACAACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|24136885|gb|BU927395.1|BU927395
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|193401127|gb|FK370126.1|FK370126
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|19053688|gb|BM732355.1|BM732355
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|14126334|gb|BG790772.1|BG790772
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGACCTGCCAATCAAGGTG
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTG
EST: gi|19269784|gb|BM886040.1|BM886040
EST:     ACGANAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAAGTGCCAATCANGGTGTTCAAGATCAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|16346473|gb|BI972077.1|BI972077
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|193431003|gb|FK398191.1|FK398191
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|11412008|gb|BF424019.1|BF424019
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGAATGT                         GTTCTTTGTGGACGAAGTGCCAATCAAGGTGTTCAAGAACAGCAAAGAACT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGA-CT
EST: gi|193337807|gb|FK302118.1|FK302118
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|16996918|gb|BM086290.1|BM086290
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|10239027|gb|BE807915.1|BE807915
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCATGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|15813096|gb|BI785371.1|BI785371
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|6566722|gb|AW234354.1|AW234354
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAAATCAGG-TGTTCAAGAACAGCAAGGACC
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAA-TCAGGGTGTTCAAGAACAGCAAGGAC-
EST: gi|192327271|gb|FK019548.1|FK019548
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|6726859|gb|AW311278.1|AW311278
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCATGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|16996796|gb|BM086178.1|BM086178
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|17022538|gb|BM093572.1|BM093572
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|21678471|gb|BQ630822.1|BQ630822
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|6725347|gb|AW309746.1|AW309746
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|5770394|gb|AI973568.1|AI973568
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCANGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|18732892|gb|BM527308.1|BM527308
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|9258985|gb|BE347132.1|BE347132
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTG
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: gi|9259378|gb|BE347525.1|BE347525
EST:     ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT                         GTTCTTTGTGGACGAGGTGCCAATCANGGTGTTCAAGAAACAGCA-GGACT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAA-CAGCAAGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGAGGCAAGGGTGATAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacacttcactcaaactctttcatacccttttttcatttttcaccctttcttggaaatcccagtcttatacttaaaaataatgtatataaatgga

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA