1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatagtcaatgccaaccacttttaatgttcagtggttttgtctattgtatctaattttgaataacatggtttttatttttgcattttatcag
species | Glycine max |
transcript | GLYMA16G03640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAA CTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCAEST: gi|207795863|gb|GD764102.1|GD764102
genomic: TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatag ... attttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATCTGCTTTCA
EST: CCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAA CTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATC
genomic: TCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatag ... attttatcagCTCCTACTGTATCCCAAGTTATGGGCCCATTGCAATCTTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCGCCCATACCCTCAAAAAGCTCCTAAAAgttagtatagtcaatgccaaccacttttaatgttcagtggttttgtctattgtatctaattttgaataacatggtttttatttttgcattttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT