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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCGCCAATTCGCATCTGCATTGACAATTGAAATCAACCGTGGATTTGCTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcctgcaaacttctaatttcattcatgcacattaaatgttattttttgcttatataatcttcatgaaatatatgtgctaaaagtgttaatcac...

Basic information

species Glycine max
transcript GLYMA16G03410.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724931|gb|AW309330.1|AW309330
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|9439799|gb|BE440313.1|BE440313
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|151399497|gb|EV269368.1|EV269368
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|12773507|gb|BG238434.1|BG238434
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|151410252|gb|EV280067.1|EV280067
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGTAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|19345746|gb|BM890626.1|BM890626
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|22522564|gb|BU081375.1|BU081375
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|192325969|gb|FK016646.1|FK016646
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGG
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGG
EST: gi|22524798|gb|BU083609.1|BU083609
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|26047825|gb|CA784486.1|CA784486
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|14991649|gb|BI317322.1|BI317322
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|192294452|gb|FG987381.1|FG987381
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|192321786|gb|FK013192.1|FK013192
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|57575556|gb|CX548531.1|CX548531
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|23050778|gb|BU577030.1|BU577030
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAAAGATTTGAAGACCTTTCTCATT                         ATTATTGGTGGGACGCGGGAT-ATATCCATTGCGGGG
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGG-ATTATATCAATTGTGGGG
EST: gi|151393790|gb|EV263665.1|EV263665
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGGAGCTGGTGCAATTT
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGG-AGCTGGTGCAATTT
EST: gi|192300856|gb|FG991178.1|FG991178
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
EST: gi|57575716|gb|CX548691.1|CX548691
EST:     CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATT                         ATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC
genomic: CTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcc ... tctatgctagATTATTGTTGGGACGTGGATTATATCAATTGTGGGGAGCTGGTGCAATTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCGCCAATTCGCATCTGCATTGACAATTGAAATCAACCGTGGATTTGCTGCCTTGCATGCTATTGGTTCTGGAAGAGATTTGAAGACATTTCTCATTgtatatttcctgcaaacttctaatttcattcatgcacattaaatgttattttttgcttatataatcttcatgaaatatatgtgctaaaagtgttaatcac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA