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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgtttcacactgttccatttcttatattaatttatgttaagctctaatgttcagcaagaagaaaaagattatgttgaacctttgatatatcat...

Basic information

species Glycine max
transcript GLYMA16G01680.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 3
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagttt------gtttcacactgttccatttcttatattaatttatgttaagctctaatgttcagcaagaagaaaaagattatgttgaacctttgatatatcat
|| ||||| || |||||||| ||||||||||| || | ||| |||||||| |||||||||| |      | |    | |||||| |||||| ||||   |  | |  || | |  | || |       |   | |   ||  ||  | || | || ||   
GAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGCgtaagtcttatctggctatttaatgttccttttctt-tattttctgctttctagttattctattgaa-ggtttggctatggggatactgg-ctttaggtacat---

upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgtttcacactgttccatttcttatattaatttatgttaagctctaatgttcagcaagaagaaaaagattatgttgaacctttgatatat-cat---
|| ||||| || |||||||| ||||||||||| || | ||| ||||| ||||||||||||  |   || |  | ||   ||  | || || |||  || |    ||   |  ||         |       |||   ||   | |||||  |  ||   
GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCgtaagcct---tccctatctttttttcttaatctttattcctgctggcttcctgtaatcc-tgttgcaagcgtttctataaagatgttatgataagtatatatg

upper sequence: GLYMA16G01680.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 4
GAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtt-tgtttcacactgttccatttcttatattaatttatgttaagctctaatgttcagcaagaagaaaaagattatgttgaacctttgatata--tcat
|| |||||||| ||||| || || || ||||| || | ||||||||||||||||||||||||   | |  | || |  | || |||   |  | ||   ||||  | |  | ||    ||   |||     |   | | |  || |  | |   | ||
GAACCAGTTTCCCATGTGGTTGCCCGCCCTTCCCCAAATGATATTCTTGAGTGGCgtaagttgcatctatctctatctctttgctt---tctacttcaattaaattttccttttagagaaactgaaccttttctagataaggctatactgtgattgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964448|gb|BM271183.1|BM271183
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|16349197|gb|BI974792.1|BI974792
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|151399625|gb|EV269496.1|EV269496
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|192330701|gb|FK022314.1|FK022314
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|13790033|gb|BG652624.1|BG652624
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|298194643|gb|HO043115.1|HO043115
EST:     AGCTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAG
EST: gi|19936822|gb|BQ081027.1|BQ081027
EST:     AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGC                         ATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATAT
genomic: AGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCgtaagtttgt ... aatgtctcagATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATAT