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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatatatttttttctgccttttcaaagtaggattctgaactgtattcggtgcacttattactgtttgatgcctgatttctgagataaaatagga...

Basic information

species Glycine max
transcript GLYMA16G01460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g08440.1 (Oryza sativa), 5'ss of exon 3
CAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatatatttttttctgccttttcaaagtaggattctgaactgtattc-----ggtgcacttattactgtttgatgcctgatttctgag-ataaaatagga--
|||||| |   |||||||||| || || || |||||| | || ||||||||  |||||||||||||||| || | |||||||| ||| |||||||| ||||||     | |  ||  |||          | || |   |  ||| || ||||     | |    | ||  |  ||  |||| |     ||||| ||    |  |   
CAAGGGGAGGAACAGCATTGGGTGCCTGTTCTGGCTCTTGGCTAGGATGGTTCTGCAGATGAGGGGTACTATCCTCCCTGGCCACAAGTGGGATGTTATGgtatgcggtgttattacttcaagaac----acgttgacattggaagtgcattcatgaagataatttcatatcctttgtatgcttatacactgagtatgtcttttgcag

upper sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g42450.1 (Oryza sativa), 5'ss of exon 3
CAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaa------atatatatttttttctgccttttcaaagtaggattctgaactgtattcggtgcacttattactgtttgatgcctgatttctgagataaaatagga
|||||| || || ||||||||||| || || ||||| ||||| ||||||||  | |||||| | |||||||||| ||| || | ||| ||||||||||||||| |      || || | |  | ||   | | | |   | |||||||||| | || ||  || |  |||   |||||  | |||  ||   |             
CAAGGGGAAGCAGAGCATTGGTTGCCTATTCTGGCTTCTTGCCAGGATGGTTCTCCAGATGCGTGGTACAATTCTCCCAGGACACAAGTGGGATGTCATGgtatactcgcaatctaaactagtatcatgcctgtaatgtttggattctgaaatataatcactg-atgtat-gttgttt--ttcctttttgtag-------------

upper sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G145308_T01 (Zea mays), 5'ss of exon 3
CAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaata---tatatttttttctgccttttcaaagt-aggattctgaactgtattcggtgcacttattactgtttgatgcctgatttctgagataaaatagga
||| || |   |||||||||| || || ||||||||  | || |||||||| |||||||||||||| || || | |||||| | ||| ||||| |||||||||   ||   |||  |  | |      |  ||  || | |||||     | |||| |||  |||    | | ||  ||| |     | |    |  |      
CAAAGGGAGGAACAGCATTGGATGCCTGTTTTGGCTTTTGGCCAGGATGGTTTTGCAGATGAGGGGCACTATCCTCCCTGGGCACAAGTGGGAAGTCATGgtatgctagcttatgatgctgttcaaaatgacattgtgatgattccaggttttatt-ggtaaactctgcattcttatatgacaataatgttgtttgcag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208316725|gb|GE115815.1|GE115815
EST:     TATTGCAGGTGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         TTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208055679|gb|GD854114.1|GD854114
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGT-CCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|207755686|gb|GD728937.1|GD728937
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: gi|31461887|gb|CD403915.1|CD403915
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCTACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|120531891|gb|EH260024.1|EH260024
EST:     TATTGCCGATGAGGGGTACAATTCGCCCTGGCCTCANATGGGATGTCCTG                         GTTGATTTGTTTTTCTATAGAGAACC
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACC
EST: gi|208045196|gb|GD839730.1|GD839730
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208329634|gb|GE127211.1|GE127211
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193522739|gb|FK480960.1|FK480960
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGG
EST: gi|193474615|gb|FK439296.1|FK439296
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|19936562|gb|BQ080921.1|BQ080921
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208036523|gb|GD834396.1|GD834396
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|9440034|gb|BE440545.1|BE440545
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|15662099|gb|BI699470.1|BI699470
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|151409225|gb|EV279033.1|EV279033
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|207844671|gb|GD813554.1|GD813554
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: gi|208186392|gb|GD982569.1|GD982569
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|213604083|gb|DB974209.1|DB974209
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGGA-GCTAAGCAACAAGAGGA
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGA-GGAGGCTAAGCAACAAGAGGA
EST: gi|207841465|gb|GD811445.1|GD811445
EST:     CCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAAGAGGCTAAGCAACAAGAGGAG
genomic: CCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208206348|gb|GE004197.1|GE004197
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193456381|gb|FK421769.1|FK421769
EST:     CTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAA
genomic: CTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAA
EST: gi|6072377|gb|AW101764.1|AW101764
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|14011580|gb|BG726502.1|BG726502
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193341526|gb|FK308866.1|FK308866
EST:     TATTACAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|207785824|gb|GD757895.1|GD757895
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: gi|208178766|gb|GD979587.1|GD979587
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193624105|gb|FK576043.1|FK576043
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAAACCAGAAGAGGCTAAGCAACAAGAGGG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAA-CCAGAGGAGGCTAAGCAACAAGAGGA
EST: gi|193663796|gb|FK612424.1|FK612424
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTT
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTT
EST: gi|207798126|gb|GD769950.1|GD769950
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208139479|gb|GD937265.1|GD937265
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193716900|gb|FK654668.1|FK654668
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAAACAAGAGGA
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAA-CAAGAGGA
EST: gi|208062060|gb|GD855854.1|GD855854
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGG
EST: gi|208162220|gb|GD961775.1|GD961775
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCA
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCA
EST: gi|193499393|gb|FK460348.1|FK460348
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAAC
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAAC
EST: gi|23727440|gb|BU761750.1|BU761750
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|16348783|gb|BI974378.1|BI974378
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193635938|gb|FK582967.1|FK582967
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTAATTTGTTTTTCTATAGAGAAC
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAAC
EST: gi|208132975|gb|GD931650.1|GD931650
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208053576|gb|GD850549.1|GD850549
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGAATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGTGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|208099972|gb|GD897611.1|GD897611
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|193459036|gb|FK422893.1|FK422893
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|207823172|gb|GD797025.1|GD797025
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAG
EST: gi|11687966|gb|BF595642.1|BF595642
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
EST: gi|18039449|gb|BM307743.1|BM307743
EST:     TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATG                         GTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG
genomic: TATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatata ... gttgatgcagGTTGATTTGTTTTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGGAAAACACAGCATTGGTTGTCTCTTTTGGCTCCTTGCAAGGATGGTATTGCAGATGAGGGGTACAATTCGCCCTGGCCTCAAATGGGATGTCATGgtaaaatatatatttttttctgccttttcaaagtaggattctgaactgtattcggtgcacttattactgtttgatgcctgatttctgagataaaatagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG