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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggtttttttttttcctttcaaaaacaagcatattggatttaattaatgtgattattggtgcttaattttgttttctaacattaaagaatttaattat...

Basic information

species Glycine max
transcript GLYMA16G01410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01410.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G17350.2 (Arabidopsis thaliana), 5'ss of exon 5
AACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttttt---ttttcctttcaaaaacaagcatattggatttaattaatgtgattattg-gtgcttaattttgttttctaacattaaagaatttaa-ttat--------------------------------------------------------------------------------------
        || | || || |||||||| ||| | ||  |    ||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||               |||| |||     || | |   |   ||| ||  ||  |  ||  ||  ||      |||||||    | |  || |||  |   |||                                                                                       
--------GAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaacacagagctttcatttatcttactaaccattcttattcaa--aacatattttctgcatgtcagtctttgtttgaagaaaagaaggaaaatgggttactatatcttagtcctggttttgtaaacgagagactttttgagtcagcttactattgcaactaattctagcatcctctgcttttctag

upper sequence: GLYMA16G01410.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G72420.1 (Arabidopsis thaliana), 5'ss of exon 5
AACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctg--------gtttttttttttcctttcaaaaacaagcatattggatttaattaatgtgattattggtgcttaattttgttttctaacattaaagaatttaattat--------
        |  | ||||| |||||||| |||  |||| |    ||||| || |||||||| |||| ||| ||||| |||||||||||||| ||||| |||| |         | |||| |||||| || | ||      |||  |  ||  ||   |     ||    | | |||        ||     | ||||          ||        
--------GTGTTTTCTCTGGGAACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTGGAATGCGGTCAAAGAAGgttaaaatcataggttttgtttttctttactaatcatcacatcatcaatcaaaaccaaagatttgcatgagtttatgcacaacttacttaactaaaaccccctcccatttttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6963593|gb|AW432286.1|AW432286
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
EST: gi|192331743|gb|FK024847.1|FK024847
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
EST: gi|208332817|gb|GE129096.1|GE129096
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATCCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
EST: gi|192330603|gb|FK021936.1|FK021936
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
EST: gi|192328840|gb|FK022584.1|FK022584
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT
EST: gi|208207007|gb|GE008370.1|GE008370
EST:     CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTTATTGATTTGGATCCATATGATACTATTGCTATGAAACTT
genomic: CTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttt ... atctttgcagTTTGATGGCTTTATTGATTTGGATTCATATGATACTATTGCTATGAAACTT