1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTAGCCTTTCAATATCTTGAAGAGCTCAGGAACGAGTTTGAGCGTGTTAATGGGTCTCAAATTGAAACTGCTGCAAGACCTTATGCCTTCATTAAGTTTGgtagatatcactttccatactgtcatatactaccatttatagcattattctcttttttcgttggtgcttaatctatttttcttttcttttccttttaattgtttaaaag
species | Glycine max |
transcript | GLYMA16G01330.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGGTCTCAAATTGAAACTGCTGCAAGACCTTATGCCTTCATTAAGTTTG ATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGCEST: gi|120494746|gb|EH222913.1|EH222913
genomic: TGGGTCTCAAATTGAAACTGCTGCAAGACCTTATGCCTTCATTAAGTTTGgtagatatca ... tgtttaaaagATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGC
EST: TGGGTCTCAAATTGAAACTGCTGCAAGACCTTAGGCCTTCATTAAGTTTG ATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGCEST: gi|254340632|gb|GR854360.1|GR854360
genomic: TGGGTCTCAAATTGAAACTGCTGCAAGACCTTATGCCTTCATTAAGTTTGgtagatatca ... tgtttaaaagATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGC
EST: GGGTCTCAAATTGAAACTGCTGCAAGACCTTTATGCCTTCATTAAGTTTG ATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGCEST: gi|11412971|gb|BF424982.1|BF424982
genomic: GGGTCTCAAATTGAAACTGCTGCAAGACC-TTATGCCTTCATTAAGTTTGgtagatatca ... tgtttaaaagATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGC
EST: TGCTGCAAGACCTTATGCCTTCATTAAGTTTG ATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCATC
genomic: TGCTGCAAGACCTTATGCCTTCATTAAGTTTGgtagatatca ... tgtttaaaagATACATTTATGCAGAAGACAAAGAAACTTTATCAGGATACCCATACTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGCCTTTCAATATCTTGAAGAGCTCAGGAACGAGTTTGAGCGTGTTAATGGGTCTCAAATTGAAACTGCTGCAAGACCTTATGCCTTCATTAAGTTTGgtagatatcactttccatactgtcatatactaccatttatagcattattctcttttttcgttggtgcttaatctatttttcttttcttttccttttaattgtttaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA