Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGTCTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttcttttctttctattgtacgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcag

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 4
GTTCCTGTCTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttcttttctttctattgtacgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcag
||||| || |||||||| || |||||||| || ||||||||||||||||| || |||||||||         ||| |  | ||       || ||||  |   ||   | |   | ||  || |   ||| |   | |||
GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATAGCGCGTTACGgtgggacaacattcatggttttccttttgttcctttgttgcatagagtgaaacttacagttata--tttgttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332370|gb|FK026035.1|FK026035
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213607318|gb|DB965148.1|DB965148
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209699300|gb|BW670264.1|BW670264
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208282952|gb|GE079818.1|GE079818
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213587829|gb|DB959653.1|DB959653
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192322478|gb|FK014959.1|FK014959
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213615347|gb|DB963541.1|DB963541
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|17023211|gb|BM094245.1|BM094245
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213617072|gb|DB961552.1|DB961552
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208126057|gb|GD926029.1|GD926029
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209714829|gb|BW674315.1|BW674315
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213596059|gb|DB966306.1|DB966306
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|254343639|gb|GR857395.1|GR857395
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209706650|gb|BW676159.1|BW676159
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213600558|gb|DB960106.1|DB960106
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192329460|gb|FK021858.1|FK021858
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213611109|gb|DB972697.1|DB972697
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACG                         TTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttct ... ctcctttcagTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCTGTCTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGgtatctttcttttctttctattgtacgcttttcttttctttttaattttatcttcacttttgtgattttctcctttcag

- - - - - - - - - - - - - - - - - -  AGAGCA