Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggattaacagatagtggtttctttctctttgatgtacctgatattacaattttgttcctttacccattgctgttttgaatgaagataagtagcttt...

Basic information

species Glycine max
transcript GLYMA15G40860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g00760.t01 (Vitis vinifera), 5'ss of exon 2
GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtat-ggattaacagatagtggtttctttctctttgatgtacctgatat-tacaattttgttcctttacccattgctgttttgaatgaagataagtagcttt
|| ||||| |||| ||| ||||| ||| | ||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||| |||||   || | |  ||  |   |||  | ||||   | |   ||  || ||  ||| ||     || |   |    ||| | |    |     | ||    
GTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATGgtattaaatcatcttatcctctcttcgctttcttct-tattattggcatgtaggattatgggaagtt-cttgtgatagttctcatgttattcttgcagtcca

upper sequence: GLYMA15G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S431_2V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggattaacagatagtggtttctttctctttgatgtacctgatattacaattttgttc-ctttacccattgctgttttgaatgaagataagtagcttt-
||||||||  ||||||| ||||| |||   ||||||||| | ||||| ||||| ||||| ||||||||||||||||| ||||| ||||||| | || |  |  || |  ||  |   | |   |||    |  ||||   |     ||  ||| | | | |    ||| ||| |    |  ||       
GTGAAGTTTTCAGCTGAGGAGCTCCGTGCTATTATGGACAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACGgtacgtatcagaaactattacttagtggatttcctatga--ttactattctgacacaattgacttcatcgaattgaatttcgaaagttactctgtgttcaag

upper sequence: GLYMA15G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ28367 (Selaginella moellendorffii), 5'ss of exon 2
GTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggattaacagatagtggtttctttctctttgatgtacctgatattacaattttgttcctttacccattgctgttttgaatgaagataagtagcttt
||||| ||||| || ||||||||||| || || |||||| | ||||| || ||||| || |||||||| ||||| ||||| |||||||||   || |  |   |||   ||||  ||  ||   |   |   |  |      | ||    |||  |||                              
GTGAAATTCACGGCAGAAGAGCTGCGCCGGATCATGGACAAGAAGCACAACATCCGGAACATGTCTGTGATTGCTCATGTCGATCACGgt---gagtttcttctag-attttccatccattcagta-gctaaagctcgtcgatctgaaattttcgccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701700|gb|BW673147.1|BW673147
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|209720081|gb|BW659468.1|BW659468
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|9986901|gb|BE661009.1|BE661009
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|209721069|gb|BW666330.1|BW666330
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|213591384|gb|DB959898.1|DB959898
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|213593027|gb|DB973500.1|DB973500
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|213614873|gb|DB956981.1|DB956981
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|209719269|gb|BW679811.1|BW679811
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|298170535|gb|HO019159.1|HO019159
EST:     CTATAAGCATAATATCCGTAATATGCCTGTCATTGCTCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
EST: gi|254347673|gb|GR853922.1|GR853922
EST:     CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG                         GAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC
genomic: CTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGgtatggatta ... tgaattgcagGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTC