Sequence
atgc intronic sequence ATGC exonic sequenceAAACCTCAGGCAGCCGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttactctgtatgctgattcgtatctaaattatttgtggtcatagttgtattttatctaattaattgtgtgaaatattaacggtgaagtatataga...
Basic information
species | Glycine max |
transcript | GLYMA15G23150.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G23150.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g52340.2 (Oryza sativa), 5'ss of exon 3
AAACCTCAGGCAGCCGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttactctgtatgctgattcgtatctaaattatttgtggtcatagttgtattttatctaattaattgtgtgaaatattaacggtgaagtatataga-----
||||| ||||| | ||||| | || | || || | ||||| |||||||| |||| ||||||||||||||| |||| ||||||||||| |||||| | || | | | | | | ||| | ||| |||| | || | || | | | | || | | | | | || | ||
AAACCACAGGCTACTGTTGATAGAACCCTTGATGCCAAGGTTTTCAAAGGATGGATTGAAACCGACAATCCATGGACATATGACGATGAGACTGATAATGgtaaagt--------tgtttttgcatccttttagtatattgtgtcccttttgtgtgttctttatt--actatatgtgacagttgctgaaaaaaacatcatttcag
upper sequence: GLYMA15G23150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g03950.t01 (Vitis vinifera), 5'ss of exon 3
AAACCTCAGGCAGCCGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttactctgta-tgctgattcgtatctaaattatttgtggtcatagttgta--ttttatctaattaattgtgtgaaatattaacggtgaagtatataga
|| || ||||| || ||||||||||| |||| | |||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| || | | ||| |||| | | | |||| || ||||| | |||| ||||| ||| | | || || | | ||
AAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttaccctgcacattctaacatttttcattttatgtt-tagttaaacgtttttgttaatttatttcttttcaagccaat--tgcatctttctgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13477810|gb|BG507539.1|BG507539EST: ATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATG ATGAGATGACATACGTGAATCTTCAACTGAATCCGGAAAGATATACTGGTT
genomic: ATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttact ... tgatatgcagATGAGATGACATACGTGAATCTTCAACTGAATCCGGAAAGATATACTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACCTCAGGCAGCCGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttactctgtatgctgattcgtatctaaattatttgtggtcatagttgtattttatctaattaattgtgtgaaatattaacggtgaagtatataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA