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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGgtatgcactgtatgagtaagttgagcttttgcttatttggtatgactacagtcttttcaaaatctgattgttaaaattaagtataccttatgtatcttct...

Basic information

species Glycine max
transcript GLYMA15G22520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G22520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G432083_T01 (Zea mays), 5'ss of exon 3
TGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGgtatgcactgtatgagtaagttgagcttttgcttatttggtatgactacagtcttttcaaaatctgattgttaaaattaagtataccttatgtatcttct---
 ||  || |  || || |  || | ||||| || |||||  | || |||||  | || || |||||||| ||||| |||||||| ||||| || ||||||||||||    |||  | |   |          |  |  ||   || |     |  ||   | | |  |  ||    ||    ||||| | |||    |     
AGGTGTATGGCAGTCACTTGTGTTGGTTTCATTTTGTGGTGCATGCACATTTTTGACCTCGATATCATTAAGTGCCATTGCAACGAATGGAGCTATGAAGgtatgctaaatatttgcacaatatttgacaattcttagggctggattgttcacccttttgattgtcttctttgctttt---cataccatttgtgggatacaga

upper sequence: GLYMA15G22520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 5
TGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGgtatgcactgtatgagtaagttgagcttttgcttatttgg-tatgactac--agtctt--ttcaaaatctgattgttaaaattaagtatac-cttatgtatcttct------------------------------------------------------------------------------------------
||| || ||| |     |  |  | || | | | ||||||   ||||||||| | ||  ||||||| ||||||||||||||||| |||||||| |||||||||     | | |  || |  | | ||     || ||||  ||  ||||   |  | |  || || || |   |       ||  || |   | | | |      |                                                                                          
TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgtaattcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag

upper sequence: GLYMA15G22520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 5'ss of exon 5
TGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGgtatgcactgtatgagtaagttgagcttttgcttatttggtatgactacagtcttttcaaaatctgattgttaaaattaagtataccttatgtatcttct--
 ||||| ||  || |  | ||||| || || || |||||    ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||||  |    |         || |||   |  | |||   |||||  |   |||||     ||    || ||||   | | ||      | |  |  | |  
AGGCATTGGTCAGTCGCTTTTGCTGGTGTCCTTTTGTGGTTTGTGTACTTTCCTGACTTCGATATCATTGAGTGCTATCGCAACTAATGGTGCAATGAAGgtagactggattctttattcttaagccacta-tcattgcttatgag-atgatctttctgtgattattttcttaagccttaataagagaaaaggcttgtttac