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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgattgcatatagccagataatttccttaaattgctttaaaatgcatattttcttgtagtatatgttggtatatacatttatgcttttctgtct...

Basic information

species Glycine max
transcript GLYMA15G20970.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G20970.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G082924_T01 (Zea mays), 5'ss of exon 3
TATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgtta-------gatgattgcatatagccagataatttccttaaattgctttaaaatgcatattttcttgtagtatatgttggtatatacatttatgcttttctgtct-------------------------------
  || | ||  ||||||||||| | |||| | | || || ||||||||||||| | |||| ||||||||||| ||||| ||||| ||||  || ||| |||| |       || |  | |   ||||    | | ||  | |||||    | |  |  || | || ||| | | | |  | | |  ||  || ||  |||  | | |                               
AGTTGTCGTCCGTAATGATGAAGTGGTTGTTAGCTGCCATAACATGGTTCTGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacctgaaggctaccattagcagtcttacttagtaaaattatcattactttaatctctttttgcaatctgt-ctagcagttaatttcattatttgatatgtgcttgatggtctctgtatgcccatattttag

upper sequence: GLYMA15G20970.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G008216_T04 (Zea mays), 5'ss of exon 1
TATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgattgcatatagcca--gataatttccttaa-----attgctttaaaatgcatattttcttgtagtatatgttggtatatacatttatgcttttctgtct--------------------------------
  || | || |||||||| ||| |||| |   | || || ||||||||||||| | |||| ||||||||||| ||||| ||||| ||||  || ||| |||| |  |   || |     |||     | || |  |||     ||||   | |  |  || |  |  |||| | | |  ||| |  ||  |  ||  ||| |||| |                                
AGTTGTCGTCTGTAATGACGAAGTAGTAGTCAGCTGCCATAACATGGTTCTGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacctgaaggctaccattagcagttgctctaaggaaaattgtcattactttgatctcgttctgtaatct-tcctggcagttaattccattatttgctgtgtggtttgatggttgatgtatgtccatattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996596|gb|CF808185.1|CF808185
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254324640|gb|GR834065.1|GR834065
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|21994815|gb|BQ786343.1|BQ786343
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATANATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|23733586|gb|BU764998.1|BU764998
EST:     GAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: GAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|23733606|gb|BU765007.1|BU765007
EST:     GAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: GAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254323403|gb|GR835904.1|GR835904
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|308098995|gb|HO760836.1|HO760836
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|4296123|gb|AI442430.1|AI442430
EST:     GCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: GCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254342299|gb|GR853436.1|GR853436
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|6846739|gb|AW349029.1|AW349029
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|14992006|gb|BI317679.1|BI317679
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254331328|gb|GR843340.1|GR843340
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254340958|gb|GR854686.1|GR854686
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|209697100|gb|BW680510.1|BW680510
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|193460941|gb|FK425806.1|FK425806
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|308098529|gb|HO760270.1|HO760270
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254342298|gb|GR853435.1|GR853435
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254325822|gb|GR838703.1|GR838703
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|21677314|gb|BQ629665.1|BQ629665
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254319210|gb|GR830558.1|GR830558
EST:     TGAGG-ACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254323222|gb|GR840027.1|GR840027
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254332005|gb|GR843748.1|GR843748
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|193573990|gb|FK530610.1|FK530610
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254313721|gb|GR831350.1|GR831350
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254332006|gb|GR843749.1|GR843749
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254340959|gb|GR854687.1|GR854687
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|23728332|gb|BU762218.1|BU762218
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254313722|gb|GR831351.1|GR831351
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254344502|gb|GR851199.1|GR851199
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|13251883|gb|BG362786.1|BG362786
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254341719|gb|GR852856.1|GR852856
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|23730432|gb|BU763306.1|BU763306
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|308097867|gb|HO761038.1|HO761038
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|254325823|gb|GR838704.1|GR838704
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
EST: gi|5606005|gb|AI900103.1|AI900103
EST:     TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAG                         GCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT
genomic: TGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgat ... cattttacagGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTATAGTATGTAATGATGAAATAGTTGCTCGATGTCACAACATGGTTCTGAGGAACACAGACCCTACTGCTCATGCAGAAGTCACTGTTATAAGAAAGgttagatgattgcatatagccagataatttccttaaattgctttaaaatgcatattttcttgtagtatatgttggtatatacatttatgcttttctgtct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA