Sequence
atgc intronic sequence ATGC exonic sequenceTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtatcttctacaaaatgctatatttttcatatcttaatatatgatgtcctgattatttctatcccctgcattaagttactaaggtaattgatgaaa...
Basic information
species | Glycine max |
transcript | GLYMA15G19820.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G19820.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g54030.1 (Oryza sativa), 5'ss of exon 1
TGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtatcttctacaaaatgctatatttttcatatcttaatatatgatgtcctgattatttctatcccctgcattaagttactaaggtaattgatgaaa--------------------------------------------
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TGGCACTTCCACCCATATGATTGCACGAATATAACTGTTTCTAATGTTACTATCTTAGCTCCTATTTCTAGTGCTCCAAACACAGATGGCATAGATCCAGgtaatcatacgaacctttcttcagtaatttcca-atcatcctgcataat-ttcagcttcttgttataccatcta--ggtttgtttctgttatcaatgacagtcattttttttatttggtgatgctgacatatagctgtatgcag
upper sequence: GLYMA15G19820.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G047414_T01 (Zea mays), 5'ss of exon 3
TGGACACTT-CATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtat-cttctacaaaatgctatatttttcatatcttaatatatgatgtcctgattatttctatcccctgcattaagttactaaggtaattgatgaaa---
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-TGGCACTTGCATCCTTATGATTGCACAAATGTGACTGTTTCGAATGTTACTATCATGTCTCCTGTTTCTGGTGCTCCAAACACAGATGGCATAGATCCAGgtattcttgctacatctgtatttaacagctttcgagtac--atcattcatgttttaaacgctttgg--cactgtaccaaacacttgaagtaccagtagatatac
upper sequence: GLYMA15G19820.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g00720.t01 (Vitis vinifera), 5'ss of exon 3
TGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtatcttctacaaaatgctatatttttcatatcttaa-tatatgatgtcctgattattt-ctatcccctgcattaagttactaaggtaat--tgatgaaa
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TGGACACTCCATCCATATGACTGCAAGAATGTGACAATTAAAAATGTTACAATTTTGGCTCCCATATTTGAAGCTCCAAACACTGATGGAATAGATCCTGgtaagtgcattccgctaact----tattttttataaatgaaatctatgatggactaaatggttgctgttcctgggcatgagtttgtttagtaggcatggtgcacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232121|gb|BE801009.1|BE801009EST: TATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTG ATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATG
genomic: TATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtatct ... atatgaacagATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGgcaagtatcttctacaaaatgctatatttttcatatcttaatatatgatgtcctgattatttctatcccctgcattaagttactaaggtaattgatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctgc