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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcag

Basic information

species Glycine max
transcript GLYMA15G18170.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcag
 | |||||  ||||   |||||| || || ||||||||||||||||| || |||||||| || |||||||||||||||||||||||| | |||||||||||  | ||        |   |  || |||    | | |  || ||   |     | |   ||| ||||  || |  |   ||||||| || ||  || ||  |               
GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttat--------actgttgttgtttgtcttataagcatttctaaagccagtgtc--tatgttgttgttcttatc--tgttgttctttttaatattgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282865|gb|BE020426.1|BE020426
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|209702466|gb|BW667098.1|BW667098
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT