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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcag

Basic information

species Glycine max
transcript GLYMA15G18170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcag
 | |||||  ||||   |||||| || || ||||||||||||||||| || |||||||| || |||||||||||||||||||||||| | |||||||||||  | ||        |   |  || |||    | | |  || ||   |     | |   ||| ||||  || |  |   ||||||| || ||  || ||  |               
GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttat--------actgttgttgtttgtcttataagcatttctaaagccagtgtc--tatgttgttgttcttatc--tgttgttctttttaatattgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410194|gb|EV280009.1|EV280009
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|22932168|gb|BU549307.1|BU549307
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGNNN
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|192327716|gb|FK021351.1|FK021351
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|192295535|gb|FG988109.1|FG988109
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|8282865|gb|BE020426.1|BE020426
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|10232891|gb|BE801779.1|BE801779
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAAGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|58021409|gb|CX708150.1|CX708150
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAACCAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|151400307|gb|EV270121.1|EV270121
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|31306158|gb|CD391361.1|CD391361
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCCAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|58015969|gb|CX702711.1|CX702711
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|209702466|gb|BW667098.1|BW667098
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|33388304|gb|CA851511.1|CA851511
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|209728367|gb|BW660005.1|BW660005
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|15663868|gb|BI701239.1|BI701239
EST:     GTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: GTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|192294770|gb|FG986619.1|FG986619
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|9820878|gb|BE556388.1|BE556388
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|151404968|gb|EV274782.1|EV274782
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|12689954|gb|BG156290.1|BG156290
EST:     TCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|151395296|gb|EV265167.1|EV265167
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|192307998|gb|FG998981.1|FG998981
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|58024451|gb|CX711192.1|CX711192
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|16996376|gb|BM085748.1|BM085748
EST:     CGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: CGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|8284546|gb|BE022114.1|BE022114
EST:     GTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: GTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|57574809|gb|CX547784.1|CX547784
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
EST: gi|192307999|gb|FG998982.1|FG998982
EST:     TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG                         TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT
genomic: TTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGgtaattaatc ... gtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTT