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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatttgttcaaattgatttattatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag

Basic information

species Glycine max
transcript GLYMA15G17340.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g43140.1 (Oryza sativa), 5'ss of exon 5
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACT--CATgtgagttatttgttcaaattgatttattatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag
||||||| |||||||| |||||||||||||||||||||||||||||||| ||  | | || | |   | |||   |      || ||  |  |  |   |   ||  |      | | || || | |  ||   | ||
GGCCAGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACgtatgtgctcccttttcccttgcgcccataatttgttgt-tgcgtccccaaaatatttgtaacatctttt-tcattgcatcag

upper sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g09460.1 (Oryza sativa), 5'ss of exon 5
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACT--CATgtgagttatttgttcaaattgatttattatgcgagg-aatatattatca------tcaatccactgatatattgtgtttttaatttag----------
| || ||||||||||| |||||||||||||| || |||||||||||||| ||  | | || |||   |  ||       | | ||   |  |  ||| |  |  ||       |||   | |  || |||   || ||  |||            
GACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACgtatgtgttccctaatccctacattcttttccccatgtcaattttctcccaagtgagccaacaaaatattaaattagattcttcttttgcattgcttcag

upper sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatttgttcaaattgattt---------attatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag---
| || ||||||||||| |||||||||||||| || |||||||||||| | || | ||  || |||| |      | ||||         ||||||  |    | || | |    ||     | | |  |||  | ||    |  |   
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctactgtgtagaagtttttaacagtttgcatcttgctctatgcag

upper sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G141241_T03 (Zea mays), 5'ss of exon 3
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatttgttcaaattgatttattatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag
| || ||||||||||| |||||||| ||||| || |||||||||||| | || ||||  ||    |  |   ||   ||   |   |     || | |     | |      | | |  | ||  | ||   | | 
GACCTGATGACATGCCAGCACATATCAAATCATCAATGTTTGGTTGTTCCCTGATgtatgtagactcctttcatcctttccattaacttttgatgtgtccaagttatatttataacacttggt-ctattgcctcat

upper sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G890647_T02 (Zea mays), 5'ss of exon 3
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatttgttcaaattgatttattatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag
| || ||||||||||| |||||||| ||||| || |||||||||||| | || ||||  ||    |  |   ||   ||   |   |     || | |     | |      | | |  | ||  | ||   | ||
GACCTGATGACATGCCAGCACATATCAAATCATCAATGTTTGGTTGTTCCCTGATgtatgtagactcctttcatcctttccattaacttttgatgtgtccaagttatatttataacacttggt-ctattgcctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471798|gb|CD413826.1|CD413826
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31469454|gb|CD411482.1|CD411482
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31467141|gb|CD409169.1|CD409169
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
EST: gi|31464497|gb|CD406525.1|CD406525
EST:     GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCAT                         GATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG
genomic: GATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatt ... tttaatttagGATACCCATTTCAAATGGAAAGCTTAATATGGGGACATGGCAG