1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGGTCTCTAGTACCTGTGCTGTGAACAATGAAGAGGCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccctttcacttctagcatcattttttttaatttattttatcatggttttcttcttattcatggaagtatagttattgtgtcatgattattgat...
species | Glycine max |
transcript | GLYMA15G17330.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTACAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|16342657|gb|BI968252.1|BI968252
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|16283453|gb|BI945558.1|BI945558
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|16349218|gb|BI974813.1|BI974813
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|298184576|gb|HO029789.1|HO029789
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATGAGGAAATCCCTTCGAGCATTGTATATGGGGAEST: gi|6482492|gb|AW201749.1|AW201749
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|31560970|gb|CD486808.1|CD486808
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|18692831|gb|BM521679.1|BM521679
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTACAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGAEST: gi|298168753|gb|HO009683.1|HO009683
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
EST: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAAT ATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
genomic: GCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccc ... ttcatttcagATTTGATAAGATCATAAATAAGGAAATCCCTTCGAGCATTGTATATGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTCTCTAGTACCTGTGCTGTGAACAATGAAGAGGCTGCAGCAAAAACAGCAGCTGTTAATTTTGATAGTGAAGCTCCAACAATgtagcagccctttcacttctagcatcattttttttaatttattttatcatggttttcttcttattcatggaagtatagttattgtgtcatgattattgat
- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc