Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGACCAGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgttttgcttagagtttggatgcatttgattagtgattttgaaaatattgtgtaccttatactttttcttcttctcttgtctacag

Basic information

species Glycine max
transcript GLYMA15G12980.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12980.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g48964.1 (Oryza sativa), 5'ss of exon 3
GGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGACCAGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgttttgcttagagtttggatgcatttgattagtgattttgaaaatattgtgtaccttatactttttcttcttctcttgtctacag
||| | | |    || |  ||||| ||||| ||||| || ||| |||| ||||||||||||||||| ||||| ||  | || || |||    | |  |||||      ||  |  | | || |          ||  |||   | |         |||||   || | |||     |   | ||||| |||||
GGAGAAGCTAGCGATCACACGTGATAAATACAGACAGACCAGATTAGATCAGTACAAGAATTATGAGAACATGCCTAATTCTGGAGAAGCAGCCGCAAAGgtg----cgtccttttgaaagctca-------ctgtgtagaactgtc--------tgtgt---ttgtgcttgacagttgacacttgtgtacag

upper sequence: GLYMA15G12980.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 5'ss of exon 3
GGATAGGTTGAGCATTAGTCGTGAGAAATATAGACAAACTAGACTAGACCAGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgttttgcttagagtttggatgcatttgattagtgattttgaaaatattgtgtaccttatactttttcttcttctc--ttgtctacag-
||| ||  | |||||    |||||||| || |||| |||||||||||| |||||||| || ||||| ||||||||||| || || |||   || ||||||||||   | |||| | |||  | | |  | ||   | | ||  || | | | ||     |  || | |||| | ||| ||||   ||   |     
GGAGAGACTTAGCATCTCCCGTGAGAAGTACAGACTAACTAGACTAGAGCAGTACAAAAACTATGAGAACATACCACATTCTGGAGAAGGTTCGGAGAAGgtaa---tattttccctaggttctagtggtataacact-gtacttataatagtacatactttctcacacttgtcctttttcttatttacttgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303675|gb|FG998657.1|FG998657
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
EST: gi|12773212|gb|BG238139.1|BG238139
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATA
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATA
EST: gi|213603753|gb|DB956290.1|DB956290
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATAA
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATAA
EST: gi|192295897|gb|FG992663.1|FG992663
EST:     AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAG                         GAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC
genomic: AGTACAAGAATTATGAAAACATACCACAATCAGGGGAAATGTCAGAGAAGgtaaatatgt ... ttgtctacagGAATGCAAAGCAACAGATAAAGGGGGGAAATATTATGATTTCTGGCAAAAC